Perform Gene Set Variation Analysis — KO_gsva • ReporterScore

Perform Gene Set Variation Analysis

KO_gsva(
  reporter_res,
  verbose = TRUE,
  method = "wilcox.test",
  p.adjust.method = "BH",
  ...
)

Arguments

reporter_res: reporter_res
verbose: verbose
method: see ko.test
p.adjust.method: p.adjust.method
...: additional parameters to gsva

Value

enrich_res

See also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_padog(), KO_safe(), KO_sea(), plot_enrich_res()

Examples

# \donttest{
## use `gsva` from the `GSVA` package.
if (requireNamespace("GSVA")) {
  data("reporter_score_res")
  gsva_res <- KO_gsva(reporter_score_res, p.adjust.method = "none")
}
#> Loading required namespace: GSVA
# }