Changelog

Source: NEWS.md

ReporterScore v0.2.2 Notes

Added

• added calculate_NS, update_all_pathway_NS, calculate_ZN_score function <2025-06-20, Fri>

ReporterScore v0.2.1 Notes

Added

• added plot_pathway_net, pathway_net_index function <2025-05-27, Tue>
• added update_pathway_xml_ls, c_net_from_pathway_xml function <2025-05-27, Tue>
• added load_CARDinfo, load_CAZy_info, and load_Enzyme_info functinos. <2025-03-24, Mon>

ReporterScore v0.1.9 Notes2024-11-28

Fixed

• fixed load_org_pathway function <2024-11-28, Thu>
• fixed issue #8 <2024-09-27, Fri>
• fixed the filepath problem ‘:’ in Windows, issue #6. <2024-09-14, Sat>

ReporterScore v0.1.7 Notes2024-08-21

Added

• add README_zh_CN.md <2024-08-20, Tue>
• add export_report_table function <2024-08-20, Tue>

ReporterScore v0.1.6 Notes2024-06-25

Fixed

• fixed the ko.test for one sample group <2024-06-25, Tue>

Added

• added kos_description argument for plot_features_network() <2024-06-25, Tue>

ReporterScore v0.1.5 Notes2024-06-05

Added

• added citation information <2024-06-03, Mon>

ReporterScore v0.1.4 Notes2024-03-29

Fixed

• fixed up_level_KO as level3_name would be duplicated <2024-04-10, Wed>
• fixed load_CPDlist() as no return <2024-04-08, Mon>
• fixed get_modulelist() as the third argument is gene <2024-04-07, Sun>

Added

• added combine_rs_res() for combining the results of ‘step by step GRSA’ to reporterscore object <2024-04-08, Mon>
• method can be ‘none’ in ko.test(), and return a NA pvalue <2024-04-08, Mon>

ReporterScore v0.1.3 Notes

Added

• add the KO_gsva(), KO_sea(), KO_safe() and KO_padog(). <2024-01-19, Fri>

ReporterScore v0.1.2 Notes2024-01-15

Added

• add the plot_KOs_network() as MetaNet is available on CRAN <2024-01-15>

ReporterScore v0.1.1 Notes2024-01-12

Fixed

• revise and re-submit to CRAN <2024-01-12>
• available on CRAN https://CRAN.R-project.org/package=ReporterScore <2024-01-12>

ReporterScore v0.1.0 Notes

Fixed

• fixed R CMD check and Bioc check <2023-12-29>
• submit to CRAN <2024-01-10, Wed>