Plot enrich_res

Plot enrich_res

Plot enrich_res

plot_enrich_res(
  enrich_res,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

# S3 method for class 'enrich_res'
plot(
  x,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

Arguments

enrich_res

enrich_res object

mode

plot style: 1~2

padj_threshold

p.adjust threshold

show_ID

show pathway id

Pathway_description

show KO description rather than KO id.

facet_level

facet plot if the type is "pathway" or "module"

facet_anno

annotation table for facet, two columns, first is level summary, second is pathway id.

str_width

default: 50

facet_str_width

str width for facet label

...

add

x

enrich_res object

Value

ggplot

ggplot

See also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_gsva(), KO_padog(), KO_safe(), KO_sea()