R/enrichment.R
KO_padog.Rd
Perform Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
KO_padog(
reporter_res,
verbose = TRUE,
perm = 1000,
p.adjust.method = "BH",
...
)
A data frame containing PADOG results for KO enrichment.
A data frame with columns "ID," "Description," "K_num," "Exist_K_num," "p.value," and "p.adjust."
# \donttest{
## use `PADOG` from the `PADOG` package.
if (requireNamespace("PADOG")) {
data("reporter_score_res")
padog_res <- KO_padog(reporter_score_res,
verbose = TRUE,
perm = 200, p.adjust.method = "none"
)
}
#> Loading required namespace: PADOG
# }