Perform gene set analysis
KO_gsa(
reporter_res,
method = "Two class unpaired",
p.adjust.method = "BH",
verbose = TRUE,
perm = 1000,
...
)
reporter_res
Problem type: "quantitative" for a continuous parameter; "Two class unpaired" ; "Survival" for censored survival outcome; "Multiclass" : more than 2 groups, coded 1,2,3...; "Two class paired" for paired outcomes, coded -1,1 (first pair), -2,2 (second pair), etc
"BH"
TRUE
1000
additional parameters to GSA
enrich_res object
# \donttest{
## use `GSA` from the `GSA` package.
if (requireNamespace("GSA")) {
data("reporter_score_res")
gsa_res <- KO_gsa(reporter_score_res, p.adjust.method = "none", perm = 200)
plot(gsa_res)
}
#> Loading required namespace: GSA
# }