Load the specific table (from 'KEGG')

Load the specific table (from 'KEGG')

Load the KOlist (from 'KEGG')

Load the CPDlist (from 'KEGG')

Load the KO description (from 'KEGG')

Load the KO_htable (from 'KEGG')

Load the Pathway_htable (from 'KEGG')

Load the Module_htable (from 'KEGG')

Load the Compound_htable (from 'KEGG')

Load the pathway information for an organism (from 'KEGG')

load_htable(type, verbose = TRUE)

load_KOlist(verbose = TRUE)

load_CPDlist(verbose = TRUE)

load_KO_desc(verbose = TRUE)

load_KO_htable(verbose = TRUE)

load_Pathway_htable(verbose = TRUE)

load_Module_htable(verbose = TRUE)

load_Compound_htable(verbose = TRUE)

load_org_pathway(org = "hsa", verbose = TRUE)

Arguments

type

"ko", "module", "pathway", "compound" ...

verbose

logical

org

kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html, default, "hsa"

Value

KO_htable

KOlist

CPDlist

KO description

KO_htable

Pathway_htable

Module_htable

Compound_htable

KOlist

Examples

Pathway_htable <- load_htable("pathway")
#> ==============================load Pathway_htable===============================
#> ============Pathway_htable download time: 2023-08-14 15:08:28.527394============
#> If you want to update Pathway_htable, use `update_htable(type='pathway')`
head(Pathway_htable)
#>   level1_name              level2_name Pathway_id
#> 1  Metabolism Global and overview maps   map01100
#> 2  Metabolism Global and overview maps   map01110
#> 3  Metabolism Global and overview maps   map01120
#> 4  Metabolism Global and overview maps   map01200
#> 5  Metabolism Global and overview maps   map01210
#> 6  Metabolism Global and overview maps   map01212
#>                                   Pathway_name
#> 1                           Metabolic pathways
#> 2        Biosynthesis of secondary metabolites
#> 3 Microbial metabolism in diverse environments
#> 4                            Carbon metabolism
#> 5              2-Oxocarboxylic acid metabolism
#> 6                        Fatty acid metabolism