Publications 📄

#: co-first

In submission

  1. Chen, Q., Yuan, M., Jiang, L., Wei, X., Liu, Z., Peng, C., Huang, Z., Tang, D., Wu, X., and Sun, J. (2023). Progressive community, biogeochemical and evolutionary remodeling of the soil microbiome underpins long-term desert ecosystem restoration. Biorxiv, 2023–2029.
  2. Chen, Q., Zhang, B., Peng, C., Huang, J., Shen, X., and Jiang, C. (2024). Kun-peng: an ultra-memory-efficient, fast, and accurate pan-domain taxonomic classifier for all. Biorxiv, 2024–12.
  3. Peng, C., Huang, Z., Wei, X., Jiang, L., Zhu, X., Liu, Z., Chen, Q., Shen, X., Gao, P., and Jiang, C. (2025). MetaNet: a scalable and integrated tool for reproducible omics network analysis. Preprint at bioRxiv, https://doi.org/10.1101/2025.06.26.661636 https://doi.org/10.1101/2025.06.26.661636.
  4. Peng, C.#, Tan, S.#, Rouillard, A.#, Zhou, L., Li, Q.-Y., Wei, X., Xiang, X., Chen, Q., Yang, C., Jiang, L., et al. (2025). Microbial diversity and functional potential in greenlandic soils under rapid arctic warming. Preprint at Social Science Research Network, https://doi.org/10.2139/ssrn.5254634 https://doi.org/10.2139/ssrn.5254634.
  5. Zhang, W., Peng, C.#, Gu, S., Su, X., He, G., Han, Y., He, C., Zhang, L., Wang, M., Zhong, L., et al. (2025). Mapping longitudinal lung mycobiome characteristics of severe COVID-19 patients, a prospective, multicenter cohort study. Preprint at Research Square, https://doi.org/10.21203/rs.3.rs-6189458/v1 https://doi.org/10.21203/rs.3.rs-6189458/v1.

Published

  1. Li, Y.#, Peng, C.#, Chi, F., Huang, Z., Yuan, M., Zhou, X., and Jiang, C. (2025). The iPhylo suite: an interactive platform for building and annotating biological and chemical taxonomic trees. Briefings Bioinf. 26, bbae679. https://doi.org/10.1093/bib/bbae679.
  2. Li, Y.#, Jiang, C.#, Yu, W.#, Peng, C.#, Gu, S.#, Ren, X., Ding, P., Qi, Z., Huang, S., Chen, Q., et al. (2025). Antiviral treatment and longitudinal viral mutation dynamics of the first documented human case of H10N5. J. Infect. 91. https://doi.org/10.1016/j.jinf.2025.106580.
  3. Huang, Y.#, Wei, X.#, Huang, X.#, Peng, C.#, Lin, B., Ren, X., He, G., Zhang, X., Jiang, C., Huang, L., et al. (2025). Pneumocystis jirovecii associated with lung virome in patients with severe pneumonia. Iscience 28. https://doi.org/10.1016/j.isci.2025.113710.
  4. Huang, L.#, Li, K.#, Peng, C.#, Gu, S., Huang, X., Gao, C., Ren, X., Cheng, M., He, G., Xu, Y., et al. (2025). Elevated antibiotic resistance gene abundance of ICU healthcare workers, a multicentre, cross-sectional study. Crit. Care 29, 170. https://doi.org/10.1186/s13054-025-05408-5.
  5. Peng, C., Chen, Q., Tan, S., Shen, X., and Jiang, C. (2024). Generalized reporter score-based enrichment analysis for omics data. Briefings Bioinf. 25, bbae116. https://doi.org/10.1093/bib/bbae116.
  6. Huang, Z.#, Peng, C.#, Rong, Z., Jiang, L., Li, Y., Feng, Y., Chen, S., Xie, C., and Jiang, C. (2024). Longitudinal mapping of personal biotic and abiotic exposomes and transcriptome in underwater confined space using wearable passive samplers. Environ. Sci. Technol. 58, 5229–5243. https://doi.org/10.1021/acs.est.3c09379.
  7. Chen, Q., Peng, C., Xie, R., Xu, H., Su, Z., Yilihan, G., Wei, X., Yang, S., Shen, Y., Ye, C., et al. (2024). Placental and fetal enrichment of microplastics from disposable paper cups: implications for metabolic and reproductive health during pregnancy. J. Hazard. Mater. 478, 135527. https://doi.org/10.1016/j.jhazmat.2024.135527.
  8. Zhu, X., Xu, T., and Peng, C. (2022). Advances in MALDI mass spectrometry imaging single cell and tissues. Front. Chem. 9. https://doi.org/10.3389/fchem.2021.782432.
  9. Wu, H.-R., Peng, C., and Chen, M. (2022). Rethinking the complexity and uncertainty of spatial networks applied to forest ecology. Sci. Rep. 12, 15917. https://doi.org/10.1038/s41598-022-16485-9.
  10. Fan, L., Peng, C., Zhu, X., Liang, Y., Xu, T., Xu, P., and Wu, S. (2022). Dihydrotanshinone I enhances cell adhesion and inhibits cell migration in osteosarcoma U−2 OS cells through CD44 and chemokine signaling. Molecules 27, 3714. https://doi.org/10.3390/molecules27123714.
  11. Xia, M., Liu, Y., Liu, J., Chen, D., Shi, Y., Bai, Z., Xiao, Y., Peng, C., Si, J., Li, P., et al. (2021). A new synonym of polygonatum in China, based on morphological and molecular evidence. PhytoKeys 175, 137–149. https://doi.org/10.3897/phytokeys.175.63383.