Plot RDA res

Plot RDA res

RDA_plot(
  phy.rda,
  Group,
  metadata = NULL,
  Group2 = NULL,
  env_rate = 1,
  mode = 1,
  tri = FALSE,
  Topn = 10,
  rate = 1,
  margin = FALSE,
  box = TRUE,
  pal = NULL,
  sample_label = TRUE,
  stat_ellipse = TRUE,
  coord_fix = FALSE,
  bi_text_size = 3,
  env_text_param = NULL,
  ...
)

Arguments

phy.rda: rda/cca object
Group: group vector for color
metadata: metadata contain Group
Group2: mapping point shape
env_rate: default 1
mode: plot mode:1~3
tri: plot variables segments?
Topn: how many variables to show?
rate: segments length rate
margin: plot the margin boxplot?
box: margin plot box or density?
pal: colors for group
sample_label: plot the labels of samples?
stat_ellipse: plot the stat_ellipse?
coord_fix: fix the coordinates y/x ratio
bi_text_size: biplot text size
env_text_param: parameters pass to geom_text
...: add

Value

ggplot

Arguments

Value

See also