Plot the reporter_res as circle_packing

Plot the reporter_res as circle_packing

plot_report_circle_packing(
  reporter_res,
  rs_threshold = 1.64,
  mode = 2,
  facet_anno = NULL,
  show_ID = FALSE,
  Pathway_description = TRUE,
  str_width = 10,
  show_level_name = "all",
  show_tip_label = TRUE
)

Arguments

reporter_res

result of `get_reporter_score`

rs_threshold

plot threshold vector, default:1.64

mode

1~2 plot style.

facet_anno

annotation table for facet, more two columns, last is pathway name, last second is pathway id.

show_ID

show pathway id

Pathway_description

show KO description rather than KO id.

str_width

str_width to wrap

show_level_name

show the level name?

show_tip_label

show the tip label?

Value

ggplot

Examples

# \donttest{
data("reporter_score_res")
if (requireNamespace("igraph") && requireNamespace("ggraph")) {
  plot_report_circle_packing(reporter_score_res, rs_threshold = c(2, -2), str_width = 40)
}
#> Loading required namespace: igraph
# }