Custom modulelist from a specific organism

Custom modulelist from a specific organism

custom_modulelist_from_org(
  org = "hsa",
  feature = "ko",
  gene = "symbol",
  verbose = TRUE
)

Arguments

org

kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html, default, "hsa"

feature

one of "ko", "gene", "compound"

gene

one of "symbol","id"

verbose

logical

Value

modulelist

See also

Other modulelist: custom_modulelist(), get_features()

Examples

hsa_pathway <- custom_modulelist_from_org(org = "hsa", feature = "gene")
#> ================================load hsa pathway================================
#> =============hsa pathway download time: 2023-08-14 15:28:13.008682==============
#> If you want to update hsa pathway, use `update_org_pathway('hsa')`
#> please assgin this custom modulelist to `reporter_score(modulelist=your_modulelist)` to do a custom enrichment.