library(ReporterScore)
#> If you use the ReporterScore package in published research, please cite:
#>
#> Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang, Generalized reporter score-based enrichment analysis for omics data, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae116, https://doi.org/10.1093/bib/bbae116 Generalized Reporter Score-based Enrichment Analysis for Omics Data
To cite ‘ReporterScore’ in publications use:
C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
Please go to https://github.com/Asa12138/ReporterScore for more details.
if (!require("devtools")) install.packages("devtools")
devtools::install_github("Asa12138/pcutils")
devtools::install_github("Asa12138/ReporterScore")
library(ReporterScore)If you have any questions/issues, please visit github issue tracker.
Here is the output of sessionInfo() on the system on which this document was compiled:
sessionInfo()
#> R version 4.5.2 (2025-10-31)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.3 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
#> [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
#> [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
#> [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] ReporterScore_0.2.5
#>
#> loaded via a namespace (and not attached):
#> [1] vctrs_0.7.1 cli_3.6.5 knitr_1.51 rlang_1.1.7
#> [5] xfun_0.56 generics_0.1.4 S7_0.2.1 textshaping_1.0.4
#> [9] jsonlite_2.0.0 glue_1.8.0 pcutils_0.2.8 htmltools_0.5.9
#> [13] ragg_1.5.0 sass_0.4.10 scales_1.4.0 rmarkdown_2.30
#> [17] grid_4.5.2 tibble_3.3.1 evaluate_1.0.5 jquerylib_0.1.4
#> [21] fastmap_1.2.0 yaml_2.3.12 lifecycle_1.0.5 compiler_4.5.2
#> [25] dplyr_1.2.0 RColorBrewer_1.1-3 fs_1.6.6 pkgconfig_2.0.3
#> [29] farver_2.1.2 systemfonts_1.3.1 digest_0.6.39 R6_2.6.1
#> [33] tidyselect_1.2.1 pillar_1.11.1 magrittr_2.0.4 bslib_0.10.0
#> [37] gtable_0.3.6 tools_4.5.2 ggplot2_4.0.2 pkgdown_2.2.0
#> [41] cachem_1.1.0 desc_1.4.3