library(ReporterScore)
#> If you use the ReporterScore package in published research, please cite:
#>
#> Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang, Generalized reporter score-based enrichment analysis for omics data, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae116, https://doi.org/10.1093/bib/bbae116 Generalized Reporter Score-based Enrichment Analysis for Omics Data
To cite ‘ReporterScore’ in publications use:
C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
Please go to https://github.com/Asa12138/ReporterScore for more details.
if (!require("devtools")) install.packages("devtools")
devtools::install_github("Asa12138/pcutils")
devtools::install_github("Asa12138/ReporterScore")
library(ReporterScore)If you have any questions/issues, please visit github issue tracker.
Here is the output of sessionInfo() on the system on which this document was compiled:
sessionInfo()
#> R version 4.4.1 (2024-06-14)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 22.04.4 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
#>
#> locale:
#> [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
#> [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
#> [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
#> [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] ReporterScore_0.1.6
#>
#> loaded via a namespace (and not attached):
#> [1] gtable_0.3.5 jsonlite_1.8.8 dplyr_1.1.4 compiler_4.4.1
#> [5] tidyselect_1.2.1 jquerylib_0.1.4 systemfonts_1.1.0 scales_1.3.0
#> [9] textshaping_0.4.0 yaml_2.3.8 fastmap_1.2.0 ggplot2_3.5.1
#> [13] R6_2.5.1 pcutils_0.2.5 generics_0.1.3 knitr_1.47
#> [17] tibble_3.2.1 desc_1.4.3 munsell_0.5.1 bslib_0.7.0
#> [21] pillar_1.9.0 rlang_1.1.4 utf8_1.2.4 cachem_1.1.0
#> [25] xfun_0.45 fs_1.6.4 sass_0.4.9 memoise_2.0.1
#> [29] cli_3.6.3 pkgdown_2.0.9 magrittr_2.0.3 digest_0.6.36
#> [33] grid_4.4.1 lifecycle_1.0.4 vctrs_0.6.5 evaluate_0.24.0
#> [37] glue_1.7.0 ragg_1.3.2 fansi_1.0.6 colorspace_2.1-0
#> [41] rmarkdown_2.27 purrr_1.0.2 tools_4.4.1 pkgconfig_2.0.3
#> [45] htmltools_0.5.8.1