Volcano plot for difference analysis — volcano_p • pctax

Volcano plot for difference analysis

volcano_p(
  res,
  logfc = 1,
  adjp = 0.05,
  text = TRUE,
  repel = TRUE,
  mode = 1,
  number = FALSE
)

Arguments

res: result of diff_da which have colnames: tax, log2FoldChange, padj, compare, sig
logfc: log_fold_change threshold
adjp: adjust_p_value threshold
text: text, TRUE
repel: repel, TRUE
mode: 1:normal; 2:multi_contrast
number: show the tax number

Value

ggplot

See also