Plot a sankey — sangji_plot • pctax

Plot a sankey

sangji_plot(
  tree,
  top_N = 5,
  notshow = c(),
  intermediate = FALSE,
  width = 3000,
  height = 500,
  ...
)

Arguments

tree: result from ann_tree
top_N: each level has top_N
notshow: some words you don't want to show
intermediate: logical, show the intermediate rank
width: width
height: height
...: look for parameters in sankeyNetwork

Value

html widget

Examples

# \donttest{
if (requireNamespace("sankeyD3") && requireNamespace("tidytree")) {
  data(otutab, package = "pcutils")
  ann_tree(taxonomy[, c(1, 5, 6, 7)], otutab) -> tree
  sangji_plot(tree)
}
#> Loading required namespace: sankeyD3
# }