Rare the species — rare_curve_species • pctax

Rare the species

rare_curve_species(
  otutab,
  step = 2000,
  method = "richness",
  mode = 2,
  reps = 3,
  threads = 1,
  verbose = TRUE
)

Arguments

otutab: otutab
step: default 2000
method: one of "richness","chao1","ace","gc","shannon","simpson","pd","pielou"
mode: 1 for little table, 2 for big
reps: reps
threads: use how many threads to calculate (default:1)
verbose: verbose

Value

ggplot

Examples

data(otutab, package = "pcutils")
a <- rare_curve_species(otutab, mode = 1)
plot(a)