Transfer taxon name or taxid to the lineage dataframe
name_or_id2df(
name_or_id,
mode = "name",
add_prefix = TRUE,
fill_miss_rank = TRUE,
data_dir = NULL
)
name or taxid
"id" or "name"
add_prefix
fill_miss_rank
directory containing nodes.dmp and names.dmp (default "/Users/asa/.taxonkit")
dataframe
Other Rtaxonkit:
check_taxonkit()
,
download_taxonkit_dataset()
,
install_taxonkit()
,
taxonkit_filter()
,
taxonkit_lca()
,
taxonkit_lineage()
,
taxonkit_list()
,
taxonkit_name2taxid()
,
taxonkit_reformat()
if (FALSE) {
name_or_id2df(c("Homo sapiens", "Akkermansia muciniphila ATCC BAA-835"))
}