Microbiome sbatch
micro_sbatch(
work_dir = "/share/home/jianglab/pengchen/work/asthma/",
step = "fastp",
all_sample_num = 40,
array = 1,
partition = "cpu",
cpus_per_task = 1,
mem_per_cpu = "2G"
)
work_dir
"fastp","rm_human","megahit","prodigal","salmon-quant",...
all sample number
array number
partition
cpus_per_task
mem_per_cpu, "2G"
No value