Microbiome sbatch — micro_sbatch • pctax

Microbiome sbatch

micro_sbatch(
  work_dir = "/share/home/jianglab/pengchen/work/asthma/",
  step = "fastp",
  all_sample_num = 40,
  array = 1,
  partition = "cpu",
  cpus_per_task = 1,
  mem_per_cpu = "2G"
)

Arguments

work_dir: work_dir
step: "fastp","rm_human","megahit","prodigal","salmon-quant",...
all_sample_num: all sample number
array: array number
partition: partition
cpus_per_task: cpus_per_task
mem_per_cpu: mem_per_cpu, "2G"

Value

No value