Performs graph-based permutation tests
grap_p_test(otutab, metadata, group = "Group", nperm = 999, ...)
an otutab data.frame, samples are columns, taxs are rows.
metadata
one group name in columns of metadata
numbers of permutations to perform
additional
ggplot
# \donttest{
if (requireNamespace("phyloseqGraphTest") && requireNamespace("phyloseq")) {
data(otutab, package = "pcutils")
grap_p_test(otutab, metadata, "Group")
}
#> Loading required namespace: phyloseqGraphTest
# }