Performs graph-based permutation tests — grap_p_test • pctax

Performs graph-based permutation tests

grap_p_test(otutab, metadata, group = "Group", nperm = 999, ...)

Arguments

otutab: an otutab data.frame, samples are columns, taxs are rows.
metadata: metadata
group: one group name in columns of metadata
nperm: numbers of permutations to perform
...: additional

Value

ggplot

Examples

# \donttest{
if (requireNamespace("phyloseqGraphTest") && requireNamespace("phyloseq")) {
  data(otutab, package = "pcutils")
  grap_p_test(otutab, metadata, "Group")
}
#> Loading required namespace: phyloseqGraphTest
# }