NOTE: this function will transfer all space to _

df2tree1(taxa)

Arguments

taxa

dataframe

Value

phylo object

Examples

data(otutab, package = "pcutils")
df2tree(taxonomy) -> tax_tree
print(tax_tree)
#> $edge
#>         [,1] [,2]
#>    [1,]  486  487
#>    [2,]  487  488
#>    [3,]  487  489
#>    [4,]  487  490
#>    [5,]  487  491
#>    [6,]  487  492
#>    [7,]  487  493
#>    [8,]  487  494
#>    [9,]  487  495
#>   [10,]  487  496
#>   [11,]  487  497
#>   [12,]  488  498
#>   [13,]  489  499
#>   [14,]  489  500
#>   [15,]  490  501
#>   [16,]  489  502
#>   [17,]  489  503
#>   [18,]  491  504
#>   [19,]  492  505
#>   [20,]  489  506
#>   [21,]  490  507
#>   [22,]  490  508
#>   [23,]  492  509
#>   [24,]  493  510
#>   [25,]  491  511
#>   [26,]  494  512
#>   [27,]  495  513
#>   [28,]  496  514
#>   [29,]  497  515
#>   [30,]  497  516
#>   [31,]  495  517
#>   [32,]  495  518
#>   [33,]  497  519
#>   [34,]  495  520
#>   [35,]  488  521
#>   [36,]  497  522
#>   [37,]  490  523
#>   [38,]  495  524
#>   [39,]  495  525
#>   [40,]  491  526
#>   [41,]  497  527
#>   [42,]  495  528
#>   [43,]  492  529
#>   [44,]  495  530
#>   [45,]  494  531
#>   [46,]  490  532
#>   [47,]  495  533
#>   [48,]  495  534
#>   [49,]  489  535
#>   [50,]  498  536
#>   [51,]  499  537
#>   [52,]  500  538
#>   [53,]  501  539
#>   [54,]  502  540
#>   [55,]  503  541
#>   [56,]  502  542
#>   [57,]  504  543
#>   [58,]  500  544
#>   [59,]  505  545
#>   [60,]  502  546
#>   [61,]  506  547
#>   [62,]  502  548
#>   [63,]  506  549
#>   [64,]  500  550
#>   [65,]  507  551
#>   [66,]  508  552
#>   [67,]  509  553
#>   [68,]  498  554
#>   [69,]  499  555
#>   [70,]  505  556
#>   [71,]  498  557
#>   [72,]  506  558
#>   [73,]  505  559
#>   [74,]  498  560
#>   [75,]  498  561
#>   [76,]  499  562
#>   [77,]  510  563
#>   [78,]  502  564
#>   [79,]  506  565
#>   [80,]  511  566
#>   [81,]  512  567
#>   [82,]  498  568
#>   [83,]  513  569
#>   [84,]  514  570
#>   [85,]  515  571
#>   [86,]  516  572
#>   [87,]  500  573
#>   [88,]  502  574
#>   [89,]  517  575
#>   [90,]  518  576
#>   [91,]  519  577
#>   [92,]  511  578
#>   [93,]  499  579
#>   [94,]  502  580
#>   [95,]  520  581
#>   [96,]  521  582
#>   [97,]  502  583
#>   [98,]  522  584
#>   [99,]  523  585
#>  [100,]  524  586
#>  [101,]  525  587
#>  [102,]  526  588
#>  [103,]  527  589
#>  [104,]  528  590
#>  [105,]  529  591
#>  [106,]  530  592
#>  [107,]  531  593
#>  [108,]  532  594
#>  [109,]  533  595
#>  [110,]  534  596
#>  [111,]  535  597
#>  [112,]  500  598
#>  [113,]  499  599
#>  [114,]  536  600
#>  [115,]  537  601
#>  [116,]  538  602
#>  [117,]  539  603
#>  [118,]  537  604
#>  [119,]  536  605
#>  [120,]  536  606
#>  [121,]  536  607
#>  [122,]  540  608
#>  [123,]  537  609
#>  [124,]  540  610
#>  [125,]  541  611
#>  [126,]  536  612
#>  [127,]  540  613
#>  [128,]  542  614
#>  [129,]  537  615
#>  [130,]  536  616
#>  [131,]  543  617
#>  [132,]  544  618
#>  [133,]  545  619
#>  [134,]  546  620
#>  [135,]  536  621
#>  [136,]  540  622
#>  [137,]  547  623
#>  [138,]  548  624
#>  [139,]  544  625
#>  [140,]  536  626
#>  [141,]  549  627
#>  [142,]  550  628
#>  [143,]  540  629
#>  [144,]  551  630
#>  [145,]  536  631
#>  [146,]  552  632
#>  [147,]  553  633
#>  [148,]  542  634
#>  [149,]  543  635
#>  [150,]  548  636
#>  [151,]  554  637
#>  [152,]  555  638
#>  [153,]  546  639
#>  [154,]  539  640
#>  [155,]  536  641
#>  [156,]  556  642
#>  [157,]  536  643
#>  [158,]  557  644
#>  [159,]  549  645
#>  [160,]  558  646
#>  [161,]  559  647
#>  [162,]  537  648
#>  [163,]  536  649
#>  [164,]  560  650
#>  [165,]  559  651
#>  [166,]  561  652
#>  [167,]  552  653
#>  [168,]  561  654
#>  [169,]  560  655
#>  [170,]  562  656
#>  [171,]  549  657
#>  [172,]  540  658
#>  [173,]  536  659
#>  [174,]  561  660
#>  [175,]  563  661
#>  [176,]  536  662
#>  [177,]  564  663
#>  [178,]  560  664
#>  [179,]  559  665
#>  [180,]  540  666
#>  [181,]  565  667
#>  [182,]  566  668
#>  [183,]  567  669
#>  [184,]  543  670
#>  [185,]  537  671
#>  [186,]  568  672
#>  [187,]  536  673
#>  [188,]  543  674
#>  [189,]  569  675
#>  [190,]  570  676
#>  [191,]  536  677
#>  [192,]  571  678
#>  [193,]  536  679
#>  [194,]  572  680
#>  [195,]  573  681
#>  [196,]  574  682
#>  [197,]  558  683
#>  [198,]  565  684
#>  [199,]  544  685
#>  [200,]  575  686
#>  [201,]  576  687
#>  [202,]  540  688
#>  [203,]  542  689
#>  [204,]  540  690
#>  [205,]  543  691
#>  [206,]  549  692
#>  [207,]  543  693
#>  [208,]  577  694
#>  [209,]  549  695
#>  [210,]  578  696
#>  [211,]  540  697
#>  [212,]  579  698
#>  [213,]  543  699
#>  [214,]  580  700
#>  [215,]  581  701
#>  [216,]  536  702
#>  [217,]  582  703
#>  [218,]  583  704
#>  [219,]  551  705
#>  [220,]  566  706
#>  [221,]  540  707
#>  [222,]  549  708
#>  [223,]  549  709
#>  [224,]  570  710
#>  [225,]  584  711
#>  [226,]  563  712
#>  [227,]  585  713
#>  [228,]  586  714
#>  [229,]  549  715
#>  [230,]  587  716
#>  [231,]  552  717
#>  [232,]  539  718
#>  [233,]  543  719
#>  [234,]  588  720
#>  [235,]  589  721
#>  [236,]  570  722
#>  [237,]  590  723
#>  [238,]  536  724
#>  [239,]  566  725
#>  [240,]  591  726
#>  [241,]  592  727
#>  [242,]  593  728
#>  [243,]  536  729
#>  [244,]  594  730
#>  [245,]  595  731
#>  [246,]  561  732
#>  [247,]  596  733
#>  [248,]  566  734
#>  [249,]  566  735
#>  [250,]  597  736
#>  [251,]  598  737
#>  [252,]  599  738
#>  [253,]  600  739
#>  [254,]  601  740
#>  [255,]  602  741
#>  [256,]  603  742
#>  [257,]  604  743
#>  [258,]  605  744
#>  [259,]  606  745
#>  [260,]  607  746
#>  [261,]  608  747
#>  [262,]  609  748
#>  [263,]  601  749
#>  [264,]  610  750
#>  [265,]  600  751
#>  [266,]  606  752
#>  [267,]  606  753
#>  [268,]  611  754
#>  [269,]  612  755
#>  [270,]  613  756
#>  [271,]  614  757
#>  [272,]  601  758
#>  [273,]  615  759
#>  [274,]  616  760
#>  [275,]  609  761
#>  [276,]  617  762
#>  [277,]  609  763
#>  [278,]  615  764
#>  [279,]  618  765
#>  [280,]  614  766
#>  [281,]  619  767
#>  [282,]  620  768
#>  [283,]  607  769
#>  [284,]  608  770
#>  [285,]  621  771
#>  [286,]  612  772
#>  [287,]  622  773
#>  [288,]  610  774
#>  [289,]  623  775
#>  [290,]  602  776
#>  [291,]  606  777
#>  [292,]  624  778
#>  [293,]  601  779
#>  [294,]  625  780
#>  [295,]  625  781
#>  [296,]  626  782
#>  [297,]  609  783
#>  [298,]  627  784
#>  [299,]  628  785
#>  [300,]  625  786
#>  [301,]  606  787
#>  [302,]  606  788
#>  [303,]  629  789
#>  [304,]  630  790
#>  [305,]  629  791
#>  [306,]  615  792
#>  [307,]  631  793
#>  [308,]  632  794
#>  [309,]  612  795
#>  [310,]  633  796
#>  [311,]  634  797
#>  [312,]  610  798
#>  [313,]  622  799
#>  [314,]  635  800
#>  [315,]  607  801
#>  [316,]  636  802
#>  [317,]  637  803
#>  [318,]  638  804
#>  [319,]  602  805
#>  [320,]  639  806
#>  [321,]  601  807
#>  [322,]  607  808
#>  [323,]  616  809
#>  [324,]  630  810
#>  [325,]  620  811
#>  [326,]  606  812
#>  [327,]  602  813
#>  [328,]  640  814
#>  [329,]  641  815
#>  [330,]  642  816
#>  [331,]  643  817
#>  [332,]  644  818
#>  [333,]  607  819
#>  [334,]  645  820
#>  [335,]  646  821
#>  [336,]  647  822
#>  [337,]  647  823
#>  [338,]  648  824
#>  [339,]  649  825
#>  [340,]  650  826
#>  [341,]  651  827
#>  [342,]  652  828
#>  [343,]  625  829
#>  [344,]  653  830
#>  [345,]  654  831
#>  [346,]  655  832
#>  [347,]  656  833
#>  [348,]  622  834
#>  [349,]  657  835
#>  [350,]  658  836
#>  [351,]  620  837
#>  [352,]  620  838
#>  [353,]  607  839
#>  [354,]  659  840
#>  [355,]  622  841
#>  [356,]  601  842
#>  [357,]  615  843
#>  [358,]  658  844
#>  [359,]  609  845
#>  [360,]  660  846
#>  [361,]  661  847
#>  [362,]  662  848
#>  [363,]  657  849
#>  [364,]  663  850
#>  [365,]  664  851
#>  [366,]  608  852
#>  [367,]  601  853
#>  [368,]  625  854
#>  [369,]  665  855
#>  [370,]  666  856
#>  [371,]  614  857
#>  [372,]  614  858
#>  [373,]  607  859
#>  [374,]  609  860
#>  [375,]  606  861
#>  [376,]  667  862
#>  [377,]  629  863
#>  [378,]  668  864
#>  [379,]  669  865
#>  [380,]  601  866
#>  [381,]  670  867
#>  [382,]  671  868
#>  [383,]  607  869
#>  [384,]  607  870
#>  [385,]  608  871
#>  [386,]  672  872
#>  [387,]  673  873
#>  [388,]  657  874
#>  [389,]  617  875
#>  [390,]  674  876
#>  [391,]  675  877
#>  [392,]  624  878
#>  [393,]  676  879
#>  [394,]  614  880
#>  [395,]  677  881
#>  [396,]  635  882
#>  [397,]  678  883
#>  [398,]  679  884
#>  [399,]  639  885
#>  [400,]  609  886
#>  [401,]  680  887
#>  [402,]  681  888
#>  [403,]  682  889
#>  [404,]  683  890
#>  [405,]  648  891
#>  [406,]  621  892
#>  [407,]  684  893
#>  [408,]  685  894
#>  [409,]  620  895
#>  [410,]  686  896
#>  [411,]  687  897
#>  [412,]  606  898
#>  [413,]  688  899
#>  [414,]  689  900
#>  [415,]  690  901
#>  [416,]  691  902
#>  [417,]  692  903
#>  [418,]  610  904
#>  [419,]  643  905
#>  [420,]  638  906
#>  [421,]  681  907
#>  [422,]  693  908
#>  [423,]  694  909
#>  [424,]  635  910
#>  [425,]  695  911
#>  [426,]  625  912
#>  [427,]  669  913
#>  [428,]  612  914
#>  [429,]  696  915
#>  [430,]  697  916
#>  [431,]  698  917
#>  [432,]  699  918
#>  [433,]  693  919
#>  [434,]  700  920
#>  [435,]  603  921
#>  [436,]  681  922
#>  [437,]  612  923
#>  [438,]  701  924
#>  [439,]  702  925
#>  [440,]  703  926
#>  [441,]  617  927
#>  [442,]  704  928
#>  [443,]  705  929
#>  [444,]  706  930
#>  [445,]  707  931
#>  [446,]  708  932
#>  [447,]  709  933
#>  [448,]  710  934
#>  [449,]  690  935
#>  [450,]  711  936
#>  [451,]  712  937
#>  [452,]  713  938
#>  [453,]  714  939
#>  [454,]  621  940
#>  [455,]  625  941
#>  [456,]  673  942
#>  [457,]  715  943
#>  [458,]  638  944
#>  [459,]  614  945
#>  [460,]  603  946
#>  [461,]  607  947
#>  [462,]  669  948
#>  [463,]  621  949
#>  [464,]  716  950
#>  [465,]  635  951
#>  [466,]  635  952
#>  [467,]  717  953
#>  [468,]  631  954
#>  [469,]  718  955
#>  [470,]  719  956
#>  [471,]  600  957
#>  [472,]  720  958
#>  [473,]  698  959
#>  [474,]  709  960
#>  [475,]  652  961
#>  [476,]  607  962
#>  [477,]  652  963
#>  [478,]  711  964
#>  [479,]  721  965
#>  [480,]  648  966
#>  [481,]  709  967
#>  [482,]  722  968
#>  [483,]  698  969
#>  [484,]  723  970
#>  [485,]  621  971
#>  [486,]  724  972
#>  [487,]  624  973
#>  [488,]  607  974
#>  [489,]  657  975
#>  [490,]  646  976
#>  [491,]  725  977
#>  [492,]  671  978
#>  [493,]  601  979
#>  [494,]  691  980
#>  [495,]  646  981
#>  [496,]  693  982
#>  [497,]  601  983
#>  [498,]  677  984
#>  [499,]  726  985
#>  [500,]  727  986
#>  [501,]  618  987
#>  [502,]  641  988
#>  [503,]  715  989
#>  [504,]  616  990
#>  [505,]  632  991
#>  [506,]  601  992
#>  [507,]  728  993
#>  [508,]  681  994
#>  [509,]  729  995
#>  [510,]  730  996
#>  [511,]  714  997
#>  [512,]  614  998
#>  [513,]  632  999
#>  [514,]  634 1000
#>  [515,]  731 1001
#>  [516,]  690 1002
#>  [517,]  691 1003
#>  [518,]  625 1004
#>  [519,]  607 1005
#>  [520,]  636 1006
#>  [521,]  711 1007
#>  [522,]  732 1008
#>  [523,]  714 1009
#>  [524,]  615 1010
#>  [525,]  673 1011
#>  [526,]  632 1012
#>  [527,]  666 1013
#>  [528,]  733 1014
#>  [529,]  638 1015
#>  [530,]  661 1016
#>  [531,]  601 1017
#>  [532,]  648 1018
#>  [533,]  734 1019
#>  [534,]  725 1020
#>  [535,]  618 1021
#>  [536,]  735 1022
#>  [537,]  624 1023
#>  [538,]  725 1024
#>  [539,]  695 1025
#>  [540,]  736 1026
#>  [541,]  721 1027
#>  [542,]  722 1028
#>  [543,]  737 1029
#>  [544,]  632 1030
#>  [545,]  630 1031
#>  [546,]  682 1032
#>  [547,]  738 1033
#>  [548,]  661 1034
#>  [549,]  739    1
#>  [550,]  740    2
#>  [551,]  741    3
#>  [552,]  742    4
#>  [553,]  741    5
#>  [554,]  743    6
#>  [555,]  744    7
#>  [556,]  745    8
#>  [557,]  746    9
#>  [558,]  747   10
#>  [559,]  748   11
#>  [560,]  749   12
#>  [561,]  750   13
#>  [562,]  744   14
#>  [563,]  751   15
#>  [564,]  752   16
#>  [565,]  753   17
#>  [566,]  754   18
#>  [567,]  755   19
#>  [568,]  756   20
#>  [569,]  757   21
#>  [570,]  752   22
#>  [571,]  758   23
#>  [572,]  759   24
#>  [573,]  760   25
#>  [574,]  761   26
#>  [575,]  762   27
#>  [576,]  763   28
#>  [577,]  764   29
#>  [578,]  745   30
#>  [579,]  765   31
#>  [580,]  766   32
#>  [581,]  767   33
#>  [582,]  768   34
#>  [583,]  769   35
#>  [584,]  770   36
#>  [585,]  771   37
#>  [586,]  742   38
#>  [587,]  772   39
#>  [588,]  773   40
#>  [589,]  774   41
#>  [590,]  748   42
#>  [591,]  775   43
#>  [592,]  776   44
#>  [593,]  777   45
#>  [594,]  778   46
#>  [595,]  779   47
#>  [596,]  776   48
#>  [597,]  780   49
#>  [598,]  781   50
#>  [599,]  782   51
#>  [600,]  780   52
#>  [601,]  783   53
#>  [602,]  784   54
#>  [603,]  765   55
#>  [604,]  785   56
#>  [605,]  786   57
#>  [606,]  773   58
#>  [607,]  787   59
#>  [608,]  783   60
#>  [609,]  772   61
#>  [610,]  746   62
#>  [611,]  788   63
#>  [612,]  789   64
#>  [613,]  773   65
#>  [614,]  790   66
#>  [615,]  791   67
#>  [616,]  792   68
#>  [617,]  793   69
#>  [618,]  794   70
#>  [619,]  795   71
#>  [620,]  779   72
#>  [621,]  786   73
#>  [622,]  783   74
#>  [623,]  747   75
#>  [624,]  796   76
#>  [625,]  797   77
#>  [626,]  798   78
#>  [627,]  799   79
#>  [628,]  800   80
#>  [629,]  765   81
#>  [630,]  801   82
#>  [631,]  802   83
#>  [632,]  803   84
#>  [633,]  798   85
#>  [634,]  804   86
#>  [635,]  772   87
#>  [636,]  805   88
#>  [637,]  757   89
#>  [638,]  745   90
#>  [639,]  806   91
#>  [640,]  807   92
#>  [641,]  808   93
#>  [642,]  757   94
#>  [643,]  809   95
#>  [644,]  810   96
#>  [645,]  786   97
#>  [646,]  811   98
#>  [647,]  812   99
#>  [648,]  813  100
#>  [649,]  814  101
#>  [650,]  815  102
#>  [651,]  810  103
#>  [652,]  816  104
#>  [653,]  817  105
#>  [654,]  768  106
#>  [655,]  810  107
#>  [656,]  818  108
#>  [657,]  786  109
#>  [658,]  762  110
#>  [659,]  744  111
#>  [660,]  819  112
#>  [661,]  820  113
#>  [662,]  821  114
#>  [663,]  822  115
#>  [664,]  823  116
#>  [665,]  824  117
#>  [666,]  825  118
#>  [667,]  826  119
#>  [668,]  773  120
#>  [669,]  798  121
#>  [670,]  827  122
#>  [671,]  745  123
#>  [672,]  828  124
#>  [673,]  829  125
#>  [674,]  830  126
#>  [675,]  831  127
#>  [676,]  795  128
#>  [677,]  832  129
#>  [678,]  817  130
#>  [679,]  833  131
#>  [680,]  795  132
#>  [681,]  834  133
#>  [682,]  835  134
#>  [683,]  836  135
#>  [684,]  786  136
#>  [685,]  837  137
#>  [686,]  838  138
#>  [687,]  839  139
#>  [688,]  840  140
#>  [689,]  792  141
#>  [690,]  811  142
#>  [691,]  799  143
#>  [692,]  791  144
#>  [693,]  841  145
#>  [694,]  744  146
#>  [695,]  747  147
#>  [696,]  842  148
#>  [697,]  750  149
#>  [698,]  843  150
#>  [699,]  844  151
#>  [700,]  845  152
#>  [701,]  846  153
#>  [702,]  847  154
#>  [703,]  848  155
#>  [704,]  789  156
#>  [705,]  849  157
#>  [706,]  850  158
#>  [707,]  851  159
#>  [708,]  852  160
#>  [709,]  853  161
#>  [710,]  799  162
#>  [711,]  854  163
#>  [712,]  800  164
#>  [713,]  773  165
#>  [714,]  762  166
#>  [715,]  841  167
#>  [716,]  747  168
#>  [717,]  780  169
#>  [718,]  855  170
#>  [719,]  856  171
#>  [720,]  857  172
#>  [721,]  858  173
#>  [722,]  859  174
#>  [723,]  813  175
#>  [724,]  860  176
#>  [725,]  861  177
#>  [726,]  862  178
#>  [727,]  863  179
#>  [728,]  864  180
#>  [729,]  865  181
#>  [730,]  866  182
#>  [731,]  772  183
#>  [732,]  867  184
#>  [733,]  868  185
#>  [734,]  786  186
#>  [735,]  831  187
#>  [736,]  869  188
#>  [737,]  870  189
#>  [738,]  871  190
#>  [739,]  872  191
#>  [740,]  823  192
#>  [741,]  854  193
#>  [742,]  779  194
#>  [743,]  873  195
#>  [744,]  874  196
#>  [745,]  875  197
#>  [746,]  876  198
#>  [747,]  877  199
#>  [748,]  878  200
#>  [749,]  879  201
#>  [750,]  880  202
#>  [751,]  881  203
#>  [752,]  882  204
#>  [753,]  883  205
#>  [754,]  884  206
#>  [755,]  788  207
#>  [756,]  885  208
#>  [757,]  886  209
#>  [758,]  887  210
#>  [759,]  888  211
#>  [760,]  792  212
#>  [761,]  889  213
#>  [762,]  762  214
#>  [763,]  753  215
#>  [764,]  776  216
#>  [765,]  890  217
#>  [766,]  772  218
#>  [767,]  891  219
#>  [768,]  747  220
#>  [769,]  892  221
#>  [770,]  893  222
#>  [771,]  802  223
#>  [772,]  800  224
#>  [773,]  894  225
#>  [774,]  895  226
#>  [775,]  896  227
#>  [776,]  897  228
#>  [777,]  837  229
#>  [778,]  788  230
#>  [779,]  826  231
#>  [780,]  898  232
#>  [781,]  853  233
#>  [782,]  800  234
#>  [783,]  899  235
#>  [784,]  871  236
#>  [785,]  900  237
#>  [786,]  901  238
#>  [787,]  881  239
#>  [788,]  902  240
#>  [789,]  851  241
#>  [790,]  903  242
#>  [791,]  812  243
#>  [792,]  904  244
#>  [793,]  747  245
#>  [794,]  905  246
#>  [795,]  798  247
#>  [796,]  906  248
#>  [797,]  907  249
#>  [798,]  908  250
#>  [799,]  799  251
#>  [800,]  909  252
#>  [801,]  910  253
#>  [802,]  772  254
#>  [803,]  911  255
#>  [804,]  912  256
#>  [805,]  913  257
#>  [806,]  742  258
#>  [807,]  914  259
#>  [808,]  915  260
#>  [809,]  916  261
#>  [810,]  917  262
#>  [811,]  890  263
#>  [812,]  789  264
#>  [813,]  918  265
#>  [814,]  919  266
#>  [815,]  771  267
#>  [816,]  920  268
#>  [817,]  921  269
#>  [818,]  800  270
#>  [819,]  921  271
#>  [820,]  762  272
#>  [821,]  916  273
#>  [822,]  788  274
#>  [823,]  922  275
#>  [824,]  923  276
#>  [825,]  924  277
#>  [826,]  925  278
#>  [827,]  926  279
#>  [828,]  747  280
#>  [829,]  848  281
#>  [830,]  927  282
#>  [831,]  928  283
#>  [832,]  929  284
#>  [833,]  930  285
#>  [834,]  824  286
#>  [835,]  742  287
#>  [836,]  931  288
#>  [837,]  773  289
#>  [838,]  884  290
#>  [839,]  932  291
#>  [840,]  800  292
#>  [841,]  933  293
#>  [842,]  788  294
#>  [843,]  934  295
#>  [844,]  744  296
#>  [845,]  848  297
#>  [846,]  884  298
#>  [847,]  935  299
#>  [848,]  813  300
#>  [849,]  936  301
#>  [850,]  811  302
#>  [851,]  762  303
#>  [852,]  937  304
#>  [853,]  938  305
#>  [854,]  921  306
#>  [855,]  910  307
#>  [856,]  837  308
#>  [857,]  939  309
#>  [858,]  854  310
#>  [859,]  923  311
#>  [860,]  940  312
#>  [861,]  772  313
#>  [862,]  941  314
#>  [863,]  942  315
#>  [864,]  860  316
#>  [865,]  943  317
#>  [866,]  913  318
#>  [867,]  762  319
#>  [868,]  944  320
#>  [869,]  903  321
#>  [870,]  945  322
#>  [871,]  946  323
#>  [872,]  797  324
#>  [873,]  947  325
#>  [874,]  948  326
#>  [875,]  800  327
#>  [876,]  949  328
#>  [877,]  892  329
#>  [878,]  919  330
#>  [879,]  950  331
#>  [880,]  951  332
#>  [881,]  952  333
#>  [882,]  831  334
#>  [883,]  953  335
#>  [884,]  954  336
#>  [885,]  772  337
#>  [886,]  947  338
#>  [887,]  955  339
#>  [888,]  928  340
#>  [889,]  892  341
#>  [890,]  744  342
#>  [891,]  956  343
#>  [892,]  957  344
#>  [893,]  954  345
#>  [894,]  958  346
#>  [895,]  959  347
#>  [896,]  960  348
#>  [897,]  961  349
#>  [898,]  962  350
#>  [899,]  963  351
#>  [900,]  964  352
#>  [901,]  965  353
#>  [902,]  966  354
#>  [903,]  772  355
#>  [904,]  753  356
#>  [905,]  762  357
#>  [906,]  967  358
#>  [907,]  968  359
#>  [908,]  867  360
#>  [909,]  933  361
#>  [910,]  744  362
#>  [911,]  969  363
#>  [912,]  970  364
#>  [913,]  762  365
#>  [914,]  861  366
#>  [915,]  971  367
#>  [916,]  770  368
#>  [917,]  972  369
#>  [918,]  973  370
#>  [919,]  742  371
#>  [920,]  974  372
#>  [921,]  975  373
#>  [922,]  951  374
#>  [923,]  976  375
#>  [924,]  977  376
#>  [925,]  890  377
#>  [926,]  978  378
#>  [927,]  772  379
#>  [928,]  979  380
#>  [929,]  788  381
#>  [930,]  837  382
#>  [931,]  762  383
#>  [932,]  980  384
#>  [933,]  981  385
#>  [934,]  772  386
#>  [935,]  956  387
#>  [936,]  826  388
#>  [937,]  800  389
#>  [938,]  982  390
#>  [939,]  762  391
#>  [940,]  916  392
#>  [941,]  983  393
#>  [942,]  984  394
#>  [943,]  985  395
#>  [944,]  750  396
#>  [945,]  854  397
#>  [946,]  986  398
#>  [947,]  987  399
#>  [948,]  837  400
#>  [949,]  871  401
#>  [950,]  866  402
#>  [951,]  933  403
#>  [952,]  988  404
#>  [953,]  989  405
#>  [954,]  990  406
#>  [955,]  762  407
#>  [956,]  742  408
#>  [957,]  991  409
#>  [958,]  786  410
#>  [959,]  992  411
#>  [960,]  993  412
#>  [961,]  747  413
#>  [962,]  994  414
#>  [963,]  995  415
#>  [964,]  966  416
#>  [965,]  771  417
#>  [966,]  996  418
#>  [967,]  780  419
#>  [968,]  997  420
#>  [969,]  998  421
#>  [970,]  815  422
#>  [971,]  999  423
#>  [972,]  954  424
#>  [973,] 1000  425
#>  [974,]  825  426
#>  [975,]  902  427
#>  [976,]  920  428
#>  [977,] 1001  429
#>  [978,] 1002  430
#>  [979,] 1003  431
#>  [980,] 1004  432
#>  [981,]  923  433
#>  [982,] 1005  434
#>  [983,] 1006  435
#>  [984,] 1007  436
#>  [985,]  916  437
#>  [986,] 1008  438
#>  [987,]  935  439
#>  [988,]  801  440
#>  [989,] 1009  441
#>  [990,] 1010  442
#>  [991,]  991  443
#>  [992,]  797  444
#>  [993,]  854  445
#>  [994,]  954  446
#>  [995,] 1011  447
#>  [996,] 1012  448
#>  [997,]  800  449
#>  [998,] 1013  450
#>  [999,] 1014  451
#> [1000,]  786  452
#> [1001,]  954  453
#> [1002,]  772  454
#> [1003,]  766  455
#> [1004,] 1015  456
#> [1005,]  881  457
#> [1006,] 1016  458
#> [1007,] 1017  459
#> [1008,] 1018  460
#> [1009,]  839  461
#> [1010,] 1019  462
#> [1011,]  923  463
#> [1012,]  864  464
#> [1013,] 1020  465
#> [1014,] 1021  466
#> [1015,] 1022  467
#> [1016,]  802  468
#> [1017,] 1023  469
#> [1018,]  742  470
#> [1019,] 1024  471
#> [1020,] 1025  472
#> [1021,] 1026  473
#> [1022,]  744  474
#> [1023,] 1027  475
#> [1024,]  742  476
#> [1025,] 1028  477
#> [1026,] 1029  478
#> [1027,] 1030  479
#> [1028,] 1031  480
#> [1029,] 1032  481
#> [1030,]  768  482
#> [1031,] 1033  483
#> [1032,] 1034  484
#> [1033,]  872  485
#> 
#> $node.label
#>   [1] "r__root"                                    
#>   [2] "k__Bacteria"                                
#>   [3] "p__Actinobacteria"                          
#>   [4] "p__Proteobacteria"                          
#>   [5] "p__Bacteroidetes"                           
#>   [6] "p__Firmicutes"                              
#>   [7] "p__Chloroflexi"                             
#>   [8] "p__Spirochaetes"                            
#>   [9] "p__Planctomycetes"                          
#>  [10] "p__Acidobacteria"                           
#>  [11] "p__Chlamydiae"                              
#>  [12] "p__Verrucomicrobia"                         
#>  [13] "c__Actinobacteria"                          
#>  [14] "c__Betaproteobacteria"                      
#>  [15] "c__Gammaproteobacteria"                     
#>  [16] "c__Flavobacteriia"                          
#>  [17] "c__Alphaproteobacteria"                     
#>  [18] "c__un_p__Proteobacteria"                    
#>  [19] "c__Bacilli"                                 
#>  [20] "c__Chloroflexia"                            
#>  [21] "c__Deltaproteobacteria"                     
#>  [22] "c__Cytophagia"                              
#>  [23] "c__Sphingobacteriia"                        
#>  [24] "c__un_p__Chloroflexi"                       
#>  [25] "c__Spirochaetia"                            
#>  [26] "c__Clostridia"                              
#>  [27] "c__Planctomycetia"                          
#>  [28] "c__Acidobacteria_Gp10"                      
#>  [29] "c__Chlamydiia"                              
#>  [30] "c__un_p__Verrucomicrobia"                   
#>  [31] "c__Spartobacteria"                          
#>  [32] "c__Acidobacteria_Gp3"                       
#>  [33] "c__Acidobacteria_Gp6"                       
#>  [34] "c__Opitutae"                                
#>  [35] "c__Acidobacteria_Gp17"                      
#>  [36] "c__un_p__Actinobacteria"                    
#>  [37] "c__Verrucomicrobiae"                        
#>  [38] "c__un_p__Bacteroidetes"                     
#>  [39] "c__Acidobacteria_Gp4"                       
#>  [40] "c__un_p__Acidobacteria"                     
#>  [41] "c__Erysipelotrichia"                        
#>  [42] "c__Subdivision3"                            
#>  [43] "c__Acidobacteria_Gp11"                      
#>  [44] "c__Caldilineae"                             
#>  [45] "c__Acidobacteria_Gp25"                      
#>  [46] "c__un_p__Planctomycetes"                    
#>  [47] "c__Bacteroidia"                             
#>  [48] "c__Acidobacteria_Gp5"                       
#>  [49] "c__Acidobacteria_Gp7"                       
#>  [50] "c__Oligoflexia"                             
#>  [51] "o__Actinomycetales"                         
#>  [52] "o__Burkholderiales"                         
#>  [53] "o__Pseudomonadales"                         
#>  [54] "o__Flavobacteriales"                        
#>  [55] "o__Rhizobiales"                             
#>  [56] "o__un_p__Proteobacteria"                    
#>  [57] "o__Sphingomonadales"                        
#>  [58] "o__Bacillales"                              
#>  [59] "o__Xanthomonadales"                         
#>  [60] "o__Herpetosiphonales"                       
#>  [61] "o__Caulobacterales"                         
#>  [62] "o__un_c__Deltaproteobacteria"               
#>  [63] "o__Rhodospirillales"                        
#>  [64] "o__Myxococcales"                            
#>  [65] "o__un_c__Gammaproteobacteria"               
#>  [66] "o__Cytophagales"                            
#>  [67] "o__Sphingobacteriales"                      
#>  [68] "o__un_p__Chloroflexi"                       
#>  [69] "o__un_c__Actinobacteria"                    
#>  [70] "o__Methylophilales"                         
#>  [71] "o__un_c__Chloroflexia"                      
#>  [72] "o__Gaiellales"                              
#>  [73] "o__Bdellovibrionales"                       
#>  [74] "o__Chloroflexales"                          
#>  [75] "o__Solirubrobacterales"                     
#>  [76] "o__Acidimicrobiales"                        
#>  [77] "o__un_c__Betaproteobacteria"                
#>  [78] "o__Spirochaetales"                          
#>  [79] "o__un_c__Alphaproteobacteria"               
#>  [80] "o__Desulfuromonadales"                      
#>  [81] "o__Clostridiales"                           
#>  [82] "o__Planctomycetales"                        
#>  [83] "o__Rubrobacterales"                         
#>  [84] "o__un_c__Acidobacteria_Gp10"                
#>  [85] "o__Chlamydiales"                            
#>  [86] "o__un_p__Verrucomicrobia"                   
#>  [87] "o__un_c__Spartobacteria"                    
#>  [88] "o__Enterobacteriales"                       
#>  [89] "o__Sneathiellales"                          
#>  [90] "o__un_c__Acidobacteria_Gp3"                 
#>  [91] "o__un_c__Acidobacteria_Gp6"                 
#>  [92] "o__Opitutales"                              
#>  [93] "o__un_c__Clostridia"                        
#>  [94] "o__Rhodocyclales"                           
#>  [95] "o__Rhodobacterales"                         
#>  [96] "o__un_c__Acidobacteria_Gp17"                
#>  [97] "o__un_p__Actinobacteria"                    
#>  [98] "o__Alphaproteobacteria_incertae_sedis"      
#>  [99] "o__Verrucomicrobiales"                      
#> [100] "o__un_p__Bacteroidetes"                     
#> [101] "o__un_c__Acidobacteria_Gp4"                 
#> [102] "o__un_p__Acidobacteria"                     
#> [103] "o__Erysipelotrichales"                      
#> [104] "o__un_c__Subdivision3"                      
#> [105] "o__un_c__Acidobacteria_Gp11"                
#> [106] "o__Caldilineales"                           
#> [107] "o__un_c__Acidobacteria_Gp25"                
#> [108] "o__un_p__Planctomycetes"                    
#> [109] "o__Bacteroidales"                           
#> [110] "o__un_c__Acidobacteria_Gp5"                 
#> [111] "o__un_c__Acidobacteria_Gp7"                 
#> [112] "o__Oligoflexales"                           
#> [113] "o__Chromatiales"                            
#> [114] "o__Nitrosomonadales"                        
#> [115] "f__Thermomonosporaceae"                     
#> [116] "f__Comamonadaceae"                          
#> [117] "f__Pseudomonadaceae"                        
#> [118] "f__Flavobacteriaceae"                       
#> [119] "f__un_o__Burkholderiales"                   
#> [120] "f__Streptomycetaceae"                       
#> [121] "f__Pseudonocardiaceae"                      
#> [122] "f__Micromonosporaceae"                      
#> [123] "f__Rhizobiaceae"                            
#> [124] "f__Oxalobacteraceae"                        
#> [125] "f__Bradyrhizobiaceae"                       
#> [126] "f__un_p__Proteobacteria"                    
#> [127] "f__Nocardioidaceae"                         
#> [128] "f__un_o__Rhizobiales"                       
#> [129] "f__Sphingomonadaceae"                       
#> [130] "f__Burkholderiales_incertae_sedis"          
#> [131] "f__Kineosporiaceae"                         
#> [132] "f__Bacillaceae_1"                           
#> [133] "f__Sinobacteraceae"                         
#> [134] "f__Herpetosiphonaceae"                      
#> [135] "f__Caulobacteraceae"                        
#> [136] "f__Microbacteriaceae"                       
#> [137] "f__Hyphomicrobiaceae"                       
#> [138] "f__un_c__Deltaproteobacteria"               
#> [139] "f__Rhodospirillaceae"                       
#> [140] "f__Xanthomonadaceae"                        
#> [141] "f__un_o__Actinomycetales"                   
#> [142] "f__Sandaracinaceae"                         
#> [143] "f__un_c__Gammaproteobacteria"               
#> [144] "f__Phyllobacteriaceae"                      
#> [145] "f__un_o__Cytophagales"                      
#> [146] "f__Streptosporangiaceae"                    
#> [147] "f__Chitinophagaceae"                        
#> [148] "f__un_p__Chloroflexi"                       
#> [149] "f__Erythrobacteraceae"                      
#> [150] "f__Paenibacillaceae_1"                      
#> [151] "f__un_o__Rhodospirillales"                  
#> [152] "f__un_c__Actinobacteria"                    
#> [153] "f__Methylophilaceae"                        
#> [154] "f__Hyphomonadaceae"                         
#> [155] "f__Cryomorphaceae"                          
#> [156] "f__Nocardiaceae"                            
#> [157] "f__un_c__Chloroflexia"                      
#> [158] "f__Promicromonosporaceae"                   
#> [159] "f__Gaiellaceae"                             
#> [160] "f__un_o__Myxococcales"                      
#> [161] "f__Bacteriovoracaceae"                      
#> [162] "f__Chloroflexaceae"                         
#> [163] "f__Burkholderiaceae"                        
#> [164] "f__Micrococcaceae"                          
#> [165] "f__Solirubrobacteraceae"                    
#> [166] "f__Oscillochloridaceae"                     
#> [167] "f__Iamiaceae"                               
#> [168] "f__Sphingobacteriaceae"                     
#> [169] "f__Acidimicrobiaceae"                       
#> [170] "f__un_o__Solirubrobacterales"               
#> [171] "f__un_c__Betaproteobacteria"                
#> [172] "f__Polyangiaceae"                           
#> [173] "f__Rhodobiaceae"                            
#> [174] "f__Glycomycetaceae"                         
#> [175] "f__un_o__Acidimicrobiales"                  
#> [176] "f__Leptospiraceae"                          
#> [177] "f__Mycobacteriaceae"                        
#> [178] "f__un_c__Alphaproteobacteria"               
#> [179] "f__Conexibacteraceae"                       
#> [180] "f__un_o__Chloroflexales"                    
#> [181] "f__Xanthobacteraceae"                       
#> [182] "f__Geobacteraceae"                          
#> [183] "f__Clostridiaceae_1"                        
#> [184] "f__Planctomycetaceae"                       
#> [185] "f__Thermoactinomycetaceae_2"                
#> [186] "f__Alcaligenaceae"                          
#> [187] "f__Rubrobacteraceae"                        
#> [188] "f__Intrasporangiaceae"                      
#> [189] "f__Paenibacillaceae_2"                      
#> [190] "f__un_c__Acidobacteria_Gp10"                
#> [191] "f__Chlamydiaceae"                           
#> [192] "f__Geodermatophilaceae"                     
#> [193] "f__un_p__Verrucomicrobia"                   
#> [194] "f__Cellulomonadaceae"                       
#> [195] "f__un_c__Spartobacteria"                    
#> [196] "f__Enterobacteriaceae"                      
#> [197] "f__Sneathiellaceae"                         
#> [198] "f__Bdellovibrionaceae"                      
#> [199] "f__un_o__Desulfuromonadales"                
#> [200] "f__un_o__Xanthomonadales"                   
#> [201] "f__un_c__Acidobacteria_Gp3"                 
#> [202] "f__un_c__Acidobacteria_Gp6"                 
#> [203] "f__Beijerinckiaceae"                        
#> [204] "f__un_o__Sphingomonadales"                  
#> [205] "f__Rhizobiales_incertae_sedis"              
#> [206] "f__Bacillaceae_2"                           
#> [207] "f__Haliangiaceae"                           
#> [208] "f__Planococcaceae"                          
#> [209] "f__Opitutaceae"                             
#> [210] "f__Myxococcaceae"                           
#> [211] "f__un_c__Clostridia"                        
#> [212] "f__Methylobacteriaceae"                     
#> [213] "f__Rhodocyclaceae"                          
#> [214] "f__un_o__Bacillales"                        
#> [215] "f__Rhodobacteraceae"                        
#> [216] "f__un_c__Acidobacteria_Gp17"                
#> [217] "f__Cryptosporangiaceae"                     
#> [218] "f__un_p__Actinobacteria"                    
#> [219] "f__un_o__Alphaproteobacteria_incertae_sedis"
#> [220] "f__Flammeovirgaceae"                        
#> [221] "f__Lachnospiraceae"                         
#> [222] "f__Brucellaceae"                            
#> [223] "f__Labilitrichaceae"                        
#> [224] "f__Cystobacteraceae"                        
#> [225] "f__un_o__Chlamydiales"                      
#> [226] "f__Verrucomicrobiaceae"                     
#> [227] "f__Spirochaetaceae"                         
#> [228] "f__un_p__Bacteroidetes"                     
#> [229] "f__un_c__Acidobacteria_Gp4"                 
#> [230] "f__Nannocystaceae"                          
#> [231] "f__un_p__Acidobacteria"                     
#> [232] "f__un_o__Sphingobacteriales"                
#> [233] "f__un_o__Flavobacteriales"                  
#> [234] "f__Alicyclobacillaceae"                     
#> [235] "f__Erysipelotrichaceae"                     
#> [236] "f__un_c__Subdivision3"                      
#> [237] "f__Parachlamydiaceae"                       
#> [238] "f__un_c__Acidobacteria_Gp11"                
#> [239] "f__Propionibacteriaceae"                    
#> [240] "f__Peptostreptococcaceae"                   
#> [241] "f__Caldilineaceae"                          
#> [242] "f__un_c__Acidobacteria_Gp25"                
#> [243] "f__un_p__Planctomycetes"                    
#> [244] "f__Sporichthyaceae"                         
#> [245] "f__Prolixibacteraceae"                      
#> [246] "f__un_c__Acidobacteria_Gp5"                 
#> [247] "f__Acidimicrobineae_incertae_sedis"         
#> [248] "f__un_c__Acidobacteria_Gp7"                 
#> [249] "f__Ruminococcaceae"                         
#> [250] "f__Gracilibacteraceae"                      
#> [251] "f__Oligoflexaceae"                          
#> [252] "f__Ectothiorhodospiraceae"                  
#> [253] "f__Nitrosomonadaceae"                       
#> [254] "g__un_f__Thermomonosporaceae"               
#> [255] "g__Pelomonas"                               
#> [256] "g__Rhizobacter"                             
#> [257] "g__Flavobacterium"                          
#> [258] "g__un_o__Burkholderiales"                   
#> [259] "g__Streptomyces"                            
#> [260] "g__Lentzea"                                 
#> [261] "g__Actinoplanes"                            
#> [262] "g__Rhizobium"                               
#> [263] "g__Noviherbaspirillum"                      
#> [264] "g__un_f__Comamonadaceae"                    
#> [265] "g__Bradyrhizobium"                          
#> [266] "g__Actinocorallia"                          
#> [267] "g__Amycolatopsis"                           
#> [268] "g__Actinophytocola"                         
#> [269] "g__un_p__Proteobacteria"                    
#> [270] "g__Kribbella"                               
#> [271] "g__un_o__Rhizobiales"                       
#> [272] "g__Sphingomonas"                            
#> [273] "g__Kinneretia"                              
#> [274] "g__un_f__Burkholderiales_incertae_sedis"    
#> [275] "g__Kineosporia"                             
#> [276] "g__un_f__Oxalobacteraceae"                  
#> [277] "g__Bacillus"                                
#> [278] "g__Pseudoduganella"                         
#> [279] "g__Piscinibacter"                           
#> [280] "g__Steroidobacter"                          
#> [281] "g__Sphingopyxis"                            
#> [282] "g__Herpetosiphon"                           
#> [283] "g__Phenylobacterium"                        
#> [284] "g__un_f__Micromonosporaceae"                
#> [285] "g__Ensifer"                                 
#> [286] "g__Agromyces"                               
#> [287] "g__Nocardioides"                            
#> [288] "g__Devosia"                                 
#> [289] "g__un_f__Bradyrhizobiaceae"                 
#> [290] "g__un_c__Deltaproteobacteria"               
#> [291] "g__Pseudomonas"                             
#> [292] "g__Kibdelosporangium"                       
#> [293] "g__Dongia"                                  
#> [294] "g__Variovorax"                              
#> [295] "g__Pseudoxanthomonas"                       
#> [296] "g__un_f__Xanthomonadaceae"                  
#> [297] "g__un_o__Actinomycetales"                   
#> [298] "g__Massilia"                                
#> [299] "g__Sandaracinus"                            
#> [300] "g__un_c__Gammaproteobacteria"               
#> [301] "g__Lysobacter"                              
#> [302] "g__un_f__Pseudonocardiaceae"                
#> [303] "g__Pseudonocardia"                          
#> [304] "g__Mesorhizobium"                           
#> [305] "g__un_o__Cytophagales"                      
#> [306] "g__Phyllobacterium"                         
#> [307] "g__Aquabacterium"                           
#> [308] "g__un_f__Streptosporangiaceae"              
#> [309] "g__Niastella"                               
#> [310] "g__Aeromicrobium"                           
#> [311] "g__un_p__Chloroflexi"                       
#> [312] "g__Altererythrobacter"                      
#> [313] "g__Bosea"                                   
#> [314] "g__Hyphomicrobium"                          
#> [315] "g__Paenibacillus"                           
#> [316] "g__Verrucosispora"                          
#> [317] "g__Reyranella"                              
#> [318] "g__un_c__Actinobacteria"                    
#> [319] "g__un_f__Methylophilaceae"                  
#> [320] "g__Permianibacter"                          
#> [321] "g__Hyphomonas"                              
#> [322] "g__Hydrogenophaga"                          
#> [323] "g__Dactylosporangium"                       
#> [324] "g__un_f__Kineosporiaceae"                   
#> [325] "g__Ohtaekwangia"                            
#> [326] "g__Caulobacter"                             
#> [327] "g__Saccharothrix"                           
#> [328] "g__Cellvibrio"                              
#> [329] "g__un_f__Cryomorphaceae"                    
#> [330] "g__Nocardia"                                
#> [331] "g__un_c__Chloroflexia"                      
#> [332] "g__Promicromonospora"                       
#> [333] "g__Gaiella"                                 
#> [334] "g__Polymorphospora"                         
#> [335] "g__un_o__Myxococcales"                      
#> [336] "g__Peredibacter"                            
#> [337] "g__un_f__Chloroflexaceae"                   
#> [338] "g__Roseiflexus"                             
#> [339] "g__Burkholderia"                            
#> [340] "g__Arthrobacter"                            
#> [341] "g__Solirubrobacter"                         
#> [342] "g__Oscillochloris"                          
#> [343] "g__Iamia"                                   
#> [344] "g__Rhodanobacter"                           
#> [345] "g__un_f__Sphingobacteriaceae"               
#> [346] "g__Ilumatobacter"                           
#> [347] "g__un_o__Solirubrobacterales"               
#> [348] "g__un_c__Betaproteobacteria"                
#> [349] "g__un_f__Hyphomicrobiaceae"                 
#> [350] "g__Sorangium"                               
#> [351] "g__un_f__Rhodobiaceae"                      
#> [352] "g__Brevundimonas"                           
#> [353] "g__Asticcacaulis"                           
#> [354] "g__Micromonospora"                          
#> [355] "g__Glycomyces"                              
#> [356] "g__Pedomicrobium"                           
#> [357] "g__Roseateles"                              
#> [358] "g__Inhella"                                 
#> [359] "g__Methyloceanibacter"                      
#> [360] "g__Paraherbaspirillum"                      
#> [361] "g__un_o__Acidimicrobiales"                  
#> [362] "g__Turneriella"                             
#> [363] "g__Mycobacterium"                           
#> [364] "g__un_f__Polyangiaceae"                     
#> [365] "g__un_c__Alphaproteobacteria"               
#> [366] "g__Conexibacter"                            
#> [367] "g__un_f__Rhizobiaceae"                      
#> [368] "g__Acidovorax"                              
#> [369] "g__Arenimonas"                              
#> [370] "g__un_o__Chloroflexales"                    
#> [371] "g__un_f__Xanthobacteraceae"                 
#> [372] "g__un_f__Sphingomonadaceae"                 
#> [373] "g__Sphingobium"                             
#> [374] "g__Rhizocola"                               
#> [375] "g__Duganella"                               
#> [376] "g__Lechevalieria"                           
#> [377] "g__Geobacter"                               
#> [378] "g__un_f__Phyllobacteriaceae"                
#> [379] "g__Clostridium_sensu_stricto"               
#> [380] "g__un_f__Planctomycetaceae"                 
#> [381] "g__Ramlibacter"                             
#> [382] "g__Planifilum"                              
#> [383] "g__Achromobacter"                           
#> [384] "g__Couchioplanes"                           
#> [385] "g__Catellatospora"                          
#> [386] "g__Shinella"                                
#> [387] "g__Rubrobacter"                             
#> [388] "g__Intrasporangium"                         
#> [389] "g__Polyangium"                              
#> [390] "g__un_f__Bacillaceae_1"                     
#> [391] "g__un_f__Paenibacillaceae_2"                
#> [392] "g__Gp10"                                    
#> [393] "g__un_f__Rhodospirillaceae"                 
#> [394] "g__un_f__Chlamydiaceae"                     
#> [395] "g__Sphingosinicella"                        
#> [396] "g__Blastococcus"                            
#> [397] "g__un_f__Paenibacillaceae_1"                
#> [398] "g__un_p__Verrucomicrobia"                   
#> [399] "g__Cellulomonas"                            
#> [400] "g__un_f__Hyphomonadaceae"                   
#> [401] "g__Herbaspirillum"                          
#> [402] "g__Spartobacteria_genera_incertae_sedis"    
#> [403] "g__un_f__Enterobacteriaceae"                
#> [404] "g__Ferrovibrio"                             
#> [405] "g__Bdellovibrio"                            
#> [406] "g__Ralstonia"                               
#> [407] "g__Microbacterium"                          
#> [408] "g__un_o__Desulfuromonadales"                
#> [409] "g__un_o__Xanthomonadales"                   
#> [410] "g__un_f__Caulobacteraceae"                  
#> [411] "g__Gp3"                                     
#> [412] "g__Gp6"                                     
#> [413] "g__Umezawaea"                               
#> [414] "g__un_f__Beijerinckiaceae"                  
#> [415] "g__un_o__Sphingomonadales"                  
#> [416] "g__Vasilyevaea"                             
#> [417] "g__Terribacillus"                           
#> [418] "g__Haliangium"                              
#> [419] "g__Rhodopseudomonas"                        
#> [420] "g__Cellulosimicrobium"                      
#> [421] "g__Methylotenera"                           
#> [422] "g__Pantoea"                                 
#> [423] "g__un_f__Planococcaceae"                    
#> [424] "g__Opitutus"                                
#> [425] "g__Brevibacillus"                           
#> [426] "g__un_f__Myxococcaceae"                     
#> [427] "g__Dokdonella"                              
#> [428] "g__Blastopirellula"                         
#> [429] "g__un_f__Nocardioidaceae"                   
#> [430] "g__un_c__Clostridia"                        
#> [431] "g__Microvirga"                              
#> [432] "g__un_f__Rhodocyclaceae"                    
#> [433] "g__un_o__Bacillales"                        
#> [434] "g__Paenisporosarcina"                       
#> [435] "g__Amaricoccus"                             
#> [436] "g__Chryseobacterium"                        
#> [437] "g__Cedecea"                                 
#> [438] "g__Marmoricola"                             
#> [439] "g__Gp17"                                    
#> [440] "g__Cryptosporangium"                        
#> [441] "g__un_p__Actinobacteria"                    
#> [442] "g__Fictibacillus"                           
#> [443] "g__Rhizomicrobium"                          
#> [444] "g__un_f__Flammeovirgaceae"                  
#> [445] "g__un_f__Lachnospiraceae"                   
#> [446] "g__Ochrobactrum"                            
#> [447] "g__Labilithrix"                             
#> [448] "g__Cystobacter"                             
#> [449] "g__un_o__Chlamydiales"                      
#> [450] "g__Bauldia"                                 
#> [451] "g__Luteolibacter"                           
#> [452] "g__un_f__Spirochaetaceae"                   
#> [453] "g__un_p__Bacteroidetes"                     
#> [454] "g__un_c__Acidobacteria_Gp4"                 
#> [455] "g__Cryobacterium"                           
#> [456] "g__Rudaea"                                  
#> [457] "g__un_f__Intrasporangiaceae"                
#> [458] "g__Nannocystis"                             
#> [459] "g__Methylovorus"                            
#> [460] "g__Novosphingobium"                         
#> [461] "g__un_f__Flavobacteriaceae"                 
#> [462] "g__Phytohabitans"                           
#> [463] "g__Pirellula"                               
#> [464] "g__Yonghaparkia"                            
#> [465] "g__un_p__Acidobacteria"                     
#> [466] "g__Cohnella"                                
#> [467] "g__Ammoniibacillus"                         
#> [468] "g__un_o__Sphingobacteriales"                
#> [469] "g__Nonomuraea"                              
#> [470] "g__un_o__Flavobacteriales"                  
#> [471] "g__Tumebacillus"                            
#> [472] "g__Actinomadura"                            
#> [473] "g__Turicibacter"                            
#> [474] "g__Uliginosibacterium"                      
#> [475] "g__un_f__Cystobacteraceae"                  
#> [476] "g__un_f__Iamiaceae"                         
#> [477] "g__Plantactinospora"                        
#> [478] "g__Aquihabitans"                            
#> [479] "g__Roseimicrobium"                          
#> [480] "g__Subdivision3_genera_incertae_sedis"      
#> [481] "g__Cupriavidus"                             
#> [482] "g__Archangium"                              
#> [483] "g__un_f__Parachlamydiaceae"                 
#> [484] "g__Methyloversatilis"                       
#> [485] "g__Gp11"                                    
#> [486] "g__un_f__Microbacteriaceae"                 
#> [487] "g__un_f__Propionibacteriaceae"              
#> [488] "g__Inquilinus"                              
#> [489] "g__Catelliglobosispora"                     
#> [490] "g__Byssovorax"                              
#> [491] "g__un_f__Bacteriovoracaceae"                
#> [492] "g__Sporacetigenium"                         
#> [493] "g__Azohydromonas"                           
#> [494] "g__Xenophilus"                              
#> [495] "g__un_f__Bacillaceae_2"                     
#> [496] "g__Bacteriovorax"                           
#> [497] "g__Lysinibacillus"                          
#> [498] "g__Caenimonas"                              
#> [499] "g__Geodermatophilus"                        
#> [500] "g__un_f__Caldilineaceae"                    
#> [501] "g__Gp25"                                    
#> [502] "g__un_f__Sinobacteraceae"                   
#> [503] "g__Gordonia"                                
#> [504] "g__un_f__Nannocystaceae"                    
#> [505] "g__Angustibacter"                           
#> [506] "g__Terrimonas"                              
#> [507] "g__Pseudorhodoferax"                        
#> [508] "g__un_p__Planctomycetes"                    
#> [509] "g__Enterobacter"                            
#> [510] "g__Sporichthya"                             
#> [511] "g__Mangrovibacterium"                       
#> [512] "g__Blastocatella"                           
#> [513] "g__Sphingorhabdus"                          
#> [514] "g__Chitinophaga"                            
#> [515] "g__un_f__Erythrobacteraceae"                
#> [516] "g__Gp5"                                     
#> [517] "g__Phreatobacter"                           
#> [518] "g__Gracilibacillus"                         
#> [519] "g__Stenotrophomonas"                        
#> [520] "g__Planosporangium"                         
#> [521] "g__un_o__Rhodospirillales"                  
#> [522] "g__un_f__Verrucomicrobiaceae"               
#> [523] "g__Aciditerrimonas"                         
#> [524] "g__Aridibacter"                             
#> [525] "g__Rubrivivax"                              
#> [526] "g__Phycicoccus"                             
#> [527] "g__un_f__Chitinophagaceae"                  
#> [528] "g__Starkeya"                                
#> [529] "g__Gp7"                                     
#> [530] "g__Methylophilus"                           
#> [531] "g__un_f__Leptospiraceae"                    
#> [532] "g__Schlegelella"                            
#> [533] "g__un_f__Burkholderiaceae"                  
#> [534] "g__Clostridium_III"                         
#> [535] "g__Romboutsia"                              
#> [536] "g__Povalibacter"                            
#> [537] "g__un_f__Gracilibacteraceae"                
#> [538] "g__Pelagibius"                              
#> [539] "g__Clostridium_XI"                          
#> [540] "g__Aggregicoccus"                           
#> [541] "g__Oligoflexus"                             
#> [542] "g__un_c__Subdivision3"                      
#> [543] "g__Parachlamydia"                           
#> [544] "g__Thioalkalivibrio"                        
#> [545] "g__Lacibacter"                              
#> [546] "g__Chryseolinea"                            
#> [547] "g__un_f__Sneathiellaceae"                   
#> [548] "g__Nitrosospira"                            
#> [549] "g__Leptospira"                              
#> 
#> $edge.length
#>    [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>   [38] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>   [75] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [112] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [149] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [186] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [223] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [260] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [297] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [334] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [371] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [408] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [445] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [482] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [519] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [556] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [593] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [630] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [667] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [704] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [741] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [778] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [815] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [852] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [889] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [926] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>  [963] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [1000] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> 
#> $tip.label
#>   [1] "s__un_f__Thermomonosporaceae"                       
#>   [2] "s__Pelomonas_puraquae"                              
#>   [3] "s__Rhizobacter_bergeniae"                           
#>   [4] "s__Flavobacterium_terrae"                           
#>   [5] "s__un_g__Rhizobacter"                               
#>   [6] "s__un_o__Burkholderiales"                           
#>   [7] "s__un_g__Streptomyces"                              
#>   [8] "s__Lentzea_flaviverrucosa"                          
#>   [9] "s__un_g__Actinoplanes"                              
#>  [10] "s__un_g__Rhizobium"                                 
#>  [11] "s__un_g__Noviherbaspirillum"                        
#>  [12] "s__un_f__Comamonadaceae"                            
#>  [13] "s__Bradyrhizobium_neotropicale"                     
#>  [14] "s__Streptomyces_ederensis"                          
#>  [15] "s__Actinocorallia_herbida"                          
#>  [16] "s__un_g__Amycolatopsis"                             
#>  [17] "s__Actinophytocola_burenkhanensis"                  
#>  [18] "s__un_p__Proteobacteria"                            
#>  [19] "s__Kribbella_catacumbae"                            
#>  [20] "s__un_o__Rhizobiales"                               
#>  [21] "s__un_g__Sphingomonas"                              
#>  [22] "s__Amycolatopsis_keratiniphila_subsp._keratiniphila"
#>  [23] "s__Kinneretia_asaccharophila"                       
#>  [24] "s__un_f__Burkholderiales_incertae_sedis"            
#>  [25] "s__Kineosporia_rhamnosa"                            
#>  [26] "s__un_f__Oxalobacteraceae"                          
#>  [27] "s__un_g__Bacillus"                                  
#>  [28] "s__Pseudoduganella_violaceinigra"                   
#>  [29] "s__Piscinibacter_aquaticus"                         
#>  [30] "s__un_g__Lentzea"                                   
#>  [31] "s__Steroidobacter_denitrificans"                    
#>  [32] "s__Sphingopyxis_soli"                               
#>  [33] "s__un_g__Herpetosiphon"                             
#>  [34] "s__Phenylobacterium_composti"                       
#>  [35] "s__un_f__Micromonosporaceae"                        
#>  [36] "s__un_g__Ensifer"                                   
#>  [37] "s__un_g__Agromyces"                                 
#>  [38] "s__un_g__Flavobacterium"                            
#>  [39] "s__un_g__Nocardioides"                              
#>  [40] "s__un_g__Devosia"                                   
#>  [41] "s__un_f__Bradyrhizobiaceae"                         
#>  [42] "s__Noviherbaspirillum_suwonense"                    
#>  [43] "s__un_c__Deltaproteobacteria"                       
#>  [44] "s__Pseudomonas_chlororaphis_subsp._piscium"         
#>  [45] "s__Kibdelosporangium_phytohabitans"                 
#>  [46] "s__Dongia_mobilis"                                  
#>  [47] "s__un_g__Variovorax"                                
#>  [48] "s__un_g__Pseudomonas"                               
#>  [49] "s__Pseudoxanthomonas_gei"                           
#>  [50] "s__un_f__Xanthomonadaceae"                          
#>  [51] "s__un_o__Actinomycetales"                           
#>  [52] "s__Pseudoxanthomonas_wuyuanensis"                   
#>  [53] "s__un_g__Massilia"                                  
#>  [54] "s__Sandaracinus_amylolyticus"                       
#>  [55] "s__Steroidobacter_agariperforans"                   
#>  [56] "s__un_c__Gammaproteobacteria"                       
#>  [57] "s__Lysobacter_brunescens"                           
#>  [58] "s__Devosia_insulae"                                 
#>  [59] "s__un_f__Pseudonocardiaceae"                        
#>  [60] "s__Massilia_aerilata"                               
#>  [61] "s__Nocardioides_albus"                              
#>  [62] "s__Actinoplanes_xinjiangensis"                      
#>  [63] "s__un_g__Pseudonocardia"                            
#>  [64] "s__un_g__Mesorhizobium"                             
#>  [65] "s__Devosia_chinhatensis"                            
#>  [66] "s__un_o__Cytophagales"                              
#>  [67] "s__Phyllobacterium_bourgognense"                    
#>  [68] "s__un_g__Aquabacterium"                             
#>  [69] "s__un_f__Streptosporangiaceae"                      
#>  [70] "s__un_g__Niastella"                                 
#>  [71] "s__Aeromicrobium_ginsengisoli"                      
#>  [72] "s__Variovorax_boronicumulans"                       
#>  [73] "s__Lysobacter_panaciterrae"                         
#>  [74] "s__Massilia_namucuonensis"                          
#>  [75] "s__Rhizobium_alvei"                                 
#>  [76] "s__un_p__Chloroflexi"                               
#>  [77] "s__un_g__Altererythrobacter"                        
#>  [78] "s__un_g__Bosea"                                     
#>  [79] "s__Hyphomicrobium_vulgare"                          
#>  [80] "s__Paenibacillus_panacisoli"                        
#>  [81] "s__un_g__Steroidobacter"                            
#>  [82] "s__Verrucosispora_andamanensis"                     
#>  [83] "s__Reyranella_soli"                                 
#>  [84] "s__un_c__Actinobacteria"                            
#>  [85] "s__Bosea_eneae"                                     
#>  [86] "s__un_f__Methylophilaceae"                          
#>  [87] "s__Nocardioides_agariphilus"                        
#>  [88] "s__Permianibacter_aggregans"                        
#>  [89] "s__Sphingomonas_soli"                               
#>  [90] "s__Lentzea_jiangxiensis"                            
#>  [91] "s__un_g__Hyphomonas"                                
#>  [92] "s__un_g__Hydrogenophaga"                            
#>  [93] "s__un_g__Dactylosporangium"                         
#>  [94] "s__Sphingomonas_daechungensis"                      
#>  [95] "s__un_f__Kineosporiaceae"                           
#>  [96] "s__Ohtaekwangia_koreensis"                          
#>  [97] "s__Lysobacter_terrae"                               
#>  [98] "s__Caulobacter_henricii"                            
#>  [99] "s__Saccharothrix_longispora"                        
#> [100] "s__Cellvibrio_mixtus_subsp._mixtus"                 
#> [101] "s__un_f__Cryomorphaceae"                            
#> [102] "s__un_g__Nocardia"                                  
#> [103] "s__un_g__Ohtaekwangia"                              
#> [104] "s__un_c__Chloroflexia"                              
#> [105] "s__Promicromonospora_xylanilytica"                  
#> [106] "s__un_g__Phenylobacterium"                          
#> [107] "s__Ohtaekwangia_kribbensis"                         
#> [108] "s__Gaiella_occulta"                                 
#> [109] "s__un_g__Lysobacter"                                
#> [110] "s__Bacillus_thuringiensis"                          
#> [111] "s__Streptomyces_acidiscabies"                       
#> [112] "s__Polymorphospora_rubra"                           
#> [113] "s__un_o__Myxococcales"                              
#> [114] "s__Peredibacter_starrii"                            
#> [115] "s__un_f__Chloroflexaceae"                           
#> [116] "s__un_g__Roseiflexus"                               
#> [117] "s__un_g__Burkholderia"                              
#> [118] "s__un_g__Arthrobacter"                              
#> [119] "s__un_g__Solirubrobacter"                           
#> [120] "s__Devosia_yakushimensis"                           
#> [121] "s__Bosea_lathyri"                                   
#> [122] "s__un_g__Oscillochloris"                            
#> [123] "s__Lentzea_kentuckyensis"                           
#> [124] "s__Iamia_majanohamensis"                            
#> [125] "s__Rhodanobacter_denitrificans"                     
#> [126] "s__un_f__Sphingobacteriaceae"                       
#> [127] "s__Ilumatobacter_fluminis"                          
#> [128] "s__Aeromicrobium_panaciterrae"                      
#> [129] "s__un_o__Solirubrobacterales"                       
#> [130] "s__un_g__Promicromonospora"                         
#> [131] "s__un_c__Betaproteobacteria"                        
#> [132] "s__un_g__Aeromicrobium"                             
#> [133] "s__un_f__Hyphomicrobiaceae"                         
#> [134] "s__Sorangium_cellulosum"                            
#> [135] "s__un_f__Rhodobiaceae"                              
#> [136] "s__Lysobacter_enzymogenes"                          
#> [137] "s__Brevundimonas_basaltis"                          
#> [138] "s__Asticcacaulis_solisilvae"                        
#> [139] "s__un_g__Micromonospora"                            
#> [140] "s__un_g__Glycomyces"                                
#> [141] "s__Aquabacterium_commune"                           
#> [142] "s__Caulobacter_fusiformis"                          
#> [143] "s__un_g__Hyphomicrobium"                            
#> [144] "s__Phyllobacterium_myrsinacearum"                   
#> [145] "s__Pedomicrobium_manganicum"                        
#> [146] "s__Streptomyces_bangladeshensis"                    
#> [147] "s__Rhizobium_subbaraonis"                           
#> [148] "s__un_g__Roseateles"                                
#> [149] "s__un_g__Bradyrhizobium"                            
#> [150] "s__Inhella_inkyongensis"                            
#> [151] "s__Methyloceanibacter_caenitepidi"                  
#> [152] "s__Paraherbaspirillum_soli"                         
#> [153] "s__un_o__Acidimicrobiales"                          
#> [154] "s__Turneriella_parva"                               
#> [155] "s__un_g__Mycobacterium"                             
#> [156] "s__Mesorhizobium_gobiense"                          
#> [157] "s__un_f__Polyangiaceae"                             
#> [158] "s__un_c__Alphaproteobacteria"                       
#> [159] "s__Conexibacter_arvalis"                            
#> [160] "s__un_f__Rhizobiaceae"                              
#> [161] "s__Acidovorax_soli"                                 
#> [162] "s__Hyphomicrobium_sulfonivorans"                    
#> [163] "s__un_g__Arenimonas"                                
#> [164] "s__un_g__Paenibacillus"                             
#> [165] "s__Devosia_pacifica"                                
#> [166] "s__Bacillus_abyssalis"                              
#> [167] "s__un_g__Pedomicrobium"                             
#> [168] "s__Rhizobium_laguerreae"                            
#> [169] "s__un_g__Pseudoxanthomonas"                         
#> [170] "s__un_o__Chloroflexales"                            
#> [171] "s__un_f__Xanthobacteraceae"                         
#> [172] "s__un_f__Sphingomonadaceae"                         
#> [173] "s__un_g__Sphingobium"                               
#> [174] "s__Rhizocola_hellebori"                             
#> [175] "s__Cellvibrio_ostraviensis"                         
#> [176] "s__Duganella_radicis"                               
#> [177] "s__un_g__Lechevalieria"                             
#> [178] "s__un_g__Geobacter"                                 
#> [179] "s__un_f__Phyllobacteriaceae"                        
#> [180] "s__un_g__Clostridium_sensu_stricto"                 
#> [181] "s__un_f__Planctomycetaceae"                         
#> [182] "s__un_g__Ramlibacter"                               
#> [183] "s__Nocardioides_jensenii"                           
#> [184] "s__Planifilum_composti"                             
#> [185] "s__un_g__Achromobacter"                             
#> [186] "s__Lysobacter_panacisoli"                           
#> [187] "s__un_g__Ilumatobacter"                             
#> [188] "s__Couchioplanes_caeruleus_subsp._azureus"          
#> [189] "s__un_g__Catellatospora"                            
#> [190] "s__Shinella_kummerowiae"                            
#> [191] "s__Rubrobacter_bracarensis"                         
#> [192] "s__Roseiflexus_castenholzii"                        
#> [193] "s__Arenimonas_daejeonensis"                         
#> [194] "s__Variovorax_soli"                                 
#> [195] "s__un_g__Intrasporangium"                           
#> [196] "s__Polyangium_fumosum"                              
#> [197] "s__un_f__Bacillaceae_1"                             
#> [198] "s__un_f__Paenibacillaceae_2"                        
#> [199] "s__un_g__Gp10"                                      
#> [200] "s__un_f__Rhodospirillaceae"                         
#> [201] "s__un_f__Chlamydiaceae"                             
#> [202] "s__Sphingosinicella_vermicomposti"                  
#> [203] "s__Blastococcus_saxobsidens"                        
#> [204] "s__un_f__Paenibacillaceae_1"                        
#> [205] "s__un_p__Verrucomicrobia"                           
#> [206] "s__Cellulomonas_humilata"                           
#> [207] "s__Pseudonocardia_adelaidensis"                     
#> [208] "s__un_f__Hyphomonadaceae"                           
#> [209] "s__Herbaspirillum_aquaticum"                        
#> [210] "s__un_g__Spartobacteria_genera_incertae_sedis"      
#> [211] "s__un_f__Enterobacteriaceae"                        
#> [212] "s__Aquabacterium_parvum"                            
#> [213] "s__Ferrovibrio_denitrificans"                       
#> [214] "s__Bacillus_infantis"                               
#> [215] "s__un_g__Actinophytocola"                           
#> [216] "s__Pseudomonas_soli"                                
#> [217] "s__Bdellovibrio_bacteriovorus"                      
#> [218] "s__Nocardioides_dilutus"                            
#> [219] "s__un_g__Ralstonia"                                 
#> [220] "s__Rhizobium_rosettiformans"                        
#> [221] "s__Microbacterium_aerolatum"                        
#> [222] "s__un_o__Desulfuromonadales"                        
#> [223] "s__Reyranella_massiliensis"                         
#> [224] "s__Paenibacillus_terrae"                            
#> [225] "s__un_o__Xanthomonadales"                           
#> [226] "s__un_f__Caulobacteraceae"                          
#> [227] "s__un_g__Gp3"                                       
#> [228] "s__un_g__Gp6"                                       
#> [229] "s__Brevundimonas_kwangchunensis"                    
#> [230] "s__Pseudonocardia_xinjiangensis"                    
#> [231] "s__Solirubrobacter_taibaiensis"                     
#> [232] "s__Umezawaea_tangerina"                             
#> [233] "s__un_g__Acidovorax"                                
#> [234] "s__Paenibacillus_glycanilyticus"                    
#> [235] "s__un_f__Beijerinckiaceae"                          
#> [236] "s__Shinella_zoogloeoides"                           
#> [237] "s__un_o__Sphingomonadales"                          
#> [238] "s__un_g__Vasilyevaea"                               
#> [239] "s__un_g__Blastococcus"                              
#> [240] "s__Terribacillus_goriensis"                         
#> [241] "s__un_g__Conexibacter"                              
#> [242] "s__un_g__Haliangium"                                
#> [243] "s__un_g__Saccharothrix"                             
#> [244] "s__Rhodopseudomonas_rhenobacensis"                  
#> [245] "s__Rhizobium_vignae"                                
#> [246] "s__Cellulosimicrobium_funkei"                       
#> [247] "s__Bosea_massiliensis"                              
#> [248] "s__un_g__Methylotenera"                             
#> [249] "s__un_g__Pantoea"                                   
#> [250] "s__un_f__Planococcaceae"                            
#> [251] "s__Hyphomicrobium_zavarzinii"                       
#> [252] "s__Opitutus_terrae"                                 
#> [253] "s__Brevibacillus_ginsengisoli"                      
#> [254] "s__Nocardioides_panacisoli"                         
#> [255] "s__un_f__Myxococcaceae"                             
#> [256] "s__un_g__Dokdonella"                                
#> [257] "s__Blastopirellula_cremea"                          
#> [258] "s__Flavobacterium_saliperosum"                      
#> [259] "s__un_f__Nocardioidaceae"                           
#> [260] "s__un_c__Clostridia"                                
#> [261] "s__Microvirga_guangxiensis"                         
#> [262] "s__un_f__Rhodocyclaceae"                            
#> [263] "s__un_g__Bdellovibrio"                              
#> [264] "s__Mesorhizobium_silamurunense"                     
#> [265] "s__un_o__Bacillales"                                
#> [266] "s__Paenisporosarcina_macmurdoensis"                 
#> [267] "s__Agromyces_indicus"                               
#> [268] "s__Amaricoccus_tamworthensis"                       
#> [269] "s__Chryseobacterium_defluvii"                       
#> [270] "s__Paenibacillus_urinalis"                          
#> [271] "s__Chryseobacterium_wanjuense"                      
#> [272] "s__Bacillus_infernus"                               
#> [273] "s__un_g__Microvirga"                                
#> [274] "s__Pseudonocardia_seranimata"                       
#> [275] "s__un_g__Cedecea"                                   
#> [276] "s__un_g__Marmoricola"                               
#> [277] "s__un_g__Gp17"                                      
#> [278] "s__Cryptosporangium_minutisporangium"               
#> [279] "s__un_p__Actinobacteria"                            
#> [280] "s__Rhizobium_nepotum"                               
#> [281] "s__Mycobacterium_canariasense"                      
#> [282] "s__un_g__Fictibacillus"                             
#> [283] "s__un_g__Rhizomicrobium"                            
#> [284] "s__un_f__Flammeovirgaceae"                          
#> [285] "s__un_f__Lachnospiraceae"                           
#> [286] "s__Burkholderia_heleia"                             
#> [287] "s__Flavobacterium_anhuiense"                        
#> [288] "s__un_g__Ochrobactrum"                              
#> [289] "s__Devosia_riboflavina"                             
#> [290] "s__Cellulomonas_hominis"                            
#> [291] "s__Labilithrix_luteola"                             
#> [292] "s__Paenibacillus_pectinilyticus"                    
#> [293] "s__un_g__Cystobacter"                               
#> [294] "s__Pseudonocardia_kunmingensis"                     
#> [295] "s__un_o__Chlamydiales"                              
#> [296] "s__Streptomyces_bullii"                             
#> [297] "s__Mycobacterium_vaccae"                            
#> [298] "s__un_g__Cellulomonas"                              
#> [299] "s__Bauldia_consociata"                              
#> [300] "s__un_g__Cellvibrio"                                
#> [301] "s__un_g__Luteolibacter"                             
#> [302] "s__un_g__Caulobacter"                               
#> [303] "s__Bacillus_nealsonii"                              
#> [304] "s__un_f__Spirochaetaceae"                           
#> [305] "s__un_p__Bacteroidetes"                             
#> [306] "s__un_g__Chryseobacterium"                          
#> [307] "s__un_g__Brevibacillus"                             
#> [308] "s__Brevundimonas_aveniformis"                       
#> [309] "s__un_c__Acidobacteria_Gp4"                         
#> [310] "s__Arenimonas_oryziterrae"                          
#> [311] "s__Marmoricola_scoriae"                             
#> [312] "s__Cryobacterium_arcticum"                          
#> [313] "s__Nocardioides_daeguensis"                         
#> [314] "s__Rudaea_cellulosilytica"                          
#> [315] "s__un_f__Intrasporangiaceae"                        
#> [316] "s__Duganella_phyllosphaerae"                        
#> [317] "s__Nannocystis_exedens"                             
#> [318] "s__un_g__Blastopirellula"                           
#> [319] "s__Bacillus_plakortidis"                            
#> [320] "s__un_g__Methylovorus"                              
#> [321] "s__Haliangium_tepidum"                              
#> [322] "s__un_g__Novosphingobium"                           
#> [323] "s__un_f__Flavobacteriaceae"                         
#> [324] "s__Altererythrobacter_troitsensis"                  
#> [325] "s__Phytohabitans_houttuyneae"                       
#> [326] "s__Pirellula_staleyi"                               
#> [327] "s__Paenibacillus_prosopidis"                        
#> [328] "s__Yonghaparkia_alkaliphila"                        
#> [329] "s__Microbacterium_fluvii"                           
#> [330] "s__un_g__Paenisporosarcina"                         
#> [331] "s__un_p__Acidobacteria"                             
#> [332] "s__Cohnella_panacarvi"                              
#> [333] "s__Ammoniibacillus_agariperforans"                  
#> [334] "s__Ilumatobacter_nonamiense"                        
#> [335] "s__un_o__Sphingobacteriales"                        
#> [336] "s__Nonomuraea_salmonea"                             
#> [337] "s__Nocardioides_mesophilus"                         
#> [338] "s__Phytohabitans_flavus"                            
#> [339] "s__un_o__Flavobacteriales"                          
#> [340] "s__Rhizomicrobium_electricum"                       
#> [341] "s__Microbacterium_arthrosphaerae"                   
#> [342] "s__Streptomyces_chrysomallus_subsp._chrysomallus"   
#> [343] "s__Tumebacillus_ginsengisoli"                       
#> [344] "s__un_g__Actinomadura"                              
#> [345] "s__Nonomuraea_maritima"                             
#> [346] "s__Turicibacter_sanguinis"                          
#> [347] "s__Uliginosibacterium_gangwonense"                  
#> [348] "s__un_f__Cystobacteraceae"                          
#> [349] "s__un_f__Iamiaceae"                                 
#> [350] "s__un_g__Plantactinospora"                          
#> [351] "s__Aquihabitans_daechungensis"                      
#> [352] "s__Roseimicrobium_gellanilyticum"                   
#> [353] "s__un_g__Subdivision3_genera_incertae_sedis"        
#> [354] "s__Cupriavidus_necator"                             
#> [355] "s__Nocardioides_caricicola"                         
#> [356] "s__Actinophytocola_timorensis"                      
#> [357] "s__Bacillus_horti"                                  
#> [358] "s__Archangium_gephyra"                              
#> [359] "s__un_f__Parachlamydiaceae"                         
#> [360] "s__un_g__Planifilum"                                
#> [361] "s__Cystobacter_violaceus"                           
#> [362] "s__Streptomyces_seranimatus"                        
#> [363] "s__Methyloversatilis_universalis"                   
#> [364] "s__un_g__Gp11"                                      
#> [365] "s__Bacillus_litoralis"                              
#> [366] "s__Lechevalieria_xinjiangensis"                     
#> [367] "s__un_f__Microbacteriaceae"                         
#> [368] "s__Ensifer_saheli"                                  
#> [369] "s__un_f__Propionibacteriaceae"                      
#> [370] "s__Inquilinus_ginsengisoli"                         
#> [371] "s__Flavobacterium_gyeonganense"                     
#> [372] "s__Catelliglobosispora_koreensis"                   
#> [373] "s__Byssovorax_cruenta"                              
#> [374] "s__un_g__Cohnella"                                  
#> [375] "s__un_f__Bacteriovoracaceae"                        
#> [376] "s__Sporacetigenium_mesophilum"                      
#> [377] "s__Bdellovibrio_exovorus"                           
#> [378] "s__Azohydromonas_australica"                        
#> [379] "s__Nocardioides_iriomotensis"                       
#> [380] "s__Xenophilus_aerolatus"                            
#> [381] "s__Pseudonocardia_parietis"                         
#> [382] "s__Brevundimonas_faecalis"                          
#> [383] "s__Bacillus_idriensis"                              
#> [384] "s__un_f__Bacillaceae_2"                             
#> [385] "s__Bacteriovorax_stolpii"                           
#> [386] "s__Nocardioides_terrigena"                          
#> [387] "s__un_g__Tumebacillus"                              
#> [388] "s__Solirubrobacter_pauli"                           
#> [389] "s__Paenibacillus_brasilensis"                       
#> [390] "s__un_g__Lysinibacillus"                            
#> [391] "s__Bacillus_invictae"                               
#> [392] "s__Microvirga_lupini"                               
#> [393] "s__Caenimonas_terrae"                               
#> [394] "s__un_g__Geodermatophilus"                          
#> [395] "s__un_f__Caldilineaceae"                            
#> [396] "s__Bradyrhizobium_daqingense"                       
#> [397] "s__Arenimonas_metalli"                              
#> [398] "s__un_g__Gp25"                                      
#> [399] "s__un_f__Sinobacteraceae"                           
#> [400] "s__un_g__Brevundimonas"                             
#> [401] "s__un_g__Shinella"                                  
#> [402] "s__Ramlibacter_henchirensis"                        
#> [403] "s__Cystobacter_gracilis"                            
#> [404] "s__un_g__Gordonia"                                  
#> [405] "s__un_f__Nannocystaceae"                            
#> [406] "s__un_g__Angustibacter"                             
#> [407] "s__Bacillus_kokeshiiformis"                         
#> [408] "s__Flavobacterium_subsaxonicum"                     
#> [409] "s__un_g__Terrimonas"                                
#> [410] "s__Lysobacter_dokdonensis"                          
#> [411] "s__un_g__Pseudorhodoferax"                          
#> [412] "s__un_p__Planctomycetes"                            
#> [413] "s__Rhizobium_rhizoryzae"                            
#> [414] "s__un_g__Enterobacter"                              
#> [415] "s__un_g__Sporichthya"                               
#> [416] "s__un_g__Cupriavidus"                               
#> [417] "s__Agromyces_subbeticus"                            
#> [418] "s__Mangrovibacterium_diazotrophicum"                
#> [419] "s__Pseudoxanthomonas_indica"                        
#> [420] "s__Blastocatella_fastidiosa"                        
#> [421] "s__Sphingorhabdus_planktonica"                      
#> [422] "s__Nocardia_salmonicida"                            
#> [423] "s__un_g__Chitinophaga"                              
#> [424] "s__Nonomuraea_muscovyensis"                         
#> [425] "s__un_f__Erythrobacteraceae"                        
#> [426] "s__Arthrobacter_globiformis"                        
#> [427] "s__un_g__Terribacillus"                             
#> [428] "s__un_g__Amaricoccus"                               
#> [429] "s__un_g__Gp5"                                       
#> [430] "s__Phreatobacter_oligotrophus"                      
#> [431] "s__un_g__Gracilibacillus"                           
#> [432] "s__un_g__Stenotrophomonas"                          
#> [433] "s__Marmoricola_aequoreus"                           
#> [434] "s__un_g__Planosporangium"                           
#> [435] "s__un_o__Rhodospirillales"                          
#> [436] "s__un_f__Verrucomicrobiaceae"                       
#> [437] "s__Microvirga_aerilata"                             
#> [438] "s__Aciditerrimonas_ferrireducens"                   
#> [439] "s__un_g__Bauldia"                                   
#> [440] "s__un_g__Verrucosispora"                            
#> [441] "s__Aridibacter_famidurans"                          
#> [442] "s__Rubrivivax_gelatinosus"                          
#> [443] "s__Terrimonas_aquatica"                             
#> [444] "s__Altererythrobacter_xinjiangensis"                
#> [445] "s__Arenimonas_donghaensis"                          
#> [446] "s__Nonomuraea_jabiensis"                            
#> [447] "s__un_g__Phycicoccus"                               
#> [448] "s__un_f__Chitinophagaceae"                          
#> [449] "s__Paenibacillus_barcinonensis"                     
#> [450] "s__Starkeya_koreensis"                              
#> [451] "s__un_g__Gp7"                                       
#> [452] "s__Lysobacter_oryzae"                               
#> [453] "s__Nonomuraea_kuesteri"                             
#> [454] "s__Nocardioides_marinquilinus"                      
#> [455] "s__un_g__Sphingopyxis"                              
#> [456] "s__un_g__Methylophilus"                             
#> [457] "s__Blastococcus_jejuensis"                          
#> [458] "s__un_f__Leptospiraceae"                            
#> [459] "s__Schlegelella_aquatica"                           
#> [460] "s__un_f__Burkholderiaceae"                          
#> [461] "s__Micromonospora_siamensis"                        
#> [462] "s__Clostridium_straminisolvens"                     
#> [463] "s__Marmoricola_bigeumensis"                         
#> [464] "s__Clostridium_roseum"                              
#> [465] "s__un_g__Romboutsia"                                
#> [466] "s__Povalibacter_uvarum"                             
#> [467] "s__un_f__Gracilibacteraceae"                        
#> [468] "s__Reyranella_graminifolii"                         
#> [469] "s__Pelagibius_litoralis"                            
#> [470] "s__Flavobacterium_hauense"                          
#> [471] "s__un_g__Clostridium_XI"                            
#> [472] "s__Aggregicoccus_edonensis"                         
#> [473] "s__Oligoflexus_tunisiensis"                         
#> [474] "s__Streptomyces_fimbriatus"                         
#> [475] "s__un_c__Subdivision3"                              
#> [476] "s__Flavobacterium_urocaniciphilum"                  
#> [477] "s__Parachlamydia_acanthamoebae"                     
#> [478] "s__Thioalkalivibrio_sulfidiphilus"                  
#> [479] "s__Lacibacter_daechungensis"                        
#> [480] "s__Chryseolinea_serpens"                            
#> [481] "s__un_f__Sneathiellaceae"                           
#> [482] "s__Phenylobacterium_koreense"                       
#> [483] "s__Nitrosospira_multiformis"                        
#> [484] "s__un_g__Leptospira"                                
#> [485] "s__un_g__Rubrobacter"                               
#> 
#> $Nnode
#> [1] 549
#> 
#> attr(,"class")
#> [1] "phylo"