NOTE: this function will do before_tree first.
df2tree(data, edge_df = FALSE)dataframe
if the data is edge_df ?
phylo object
data(otutab, package = "pcutils")
df2tree(taxonomy) -> tax_tree
print(tax_tree)
#> $edge
#> [,1] [,2]
#> [1,] 486 487
#> [2,] 487 488
#> [3,] 487 489
#> [4,] 487 490
#> [5,] 487 491
#> [6,] 487 492
#> [7,] 487 493
#> [8,] 487 494
#> [9,] 487 495
#> [10,] 487 496
#> [11,] 487 497
#> [12,] 488 498
#> [13,] 489 499
#> [14,] 489 500
#> [15,] 490 501
#> [16,] 489 502
#> [17,] 489 503
#> [18,] 491 504
#> [19,] 492 505
#> [20,] 489 506
#> [21,] 490 507
#> [22,] 490 508
#> [23,] 492 509
#> [24,] 493 510
#> [25,] 491 511
#> [26,] 494 512
#> [27,] 495 513
#> [28,] 496 514
#> [29,] 497 515
#> [30,] 497 516
#> [31,] 495 517
#> [32,] 495 518
#> [33,] 497 519
#> [34,] 495 520
#> [35,] 488 521
#> [36,] 497 522
#> [37,] 490 523
#> [38,] 495 524
#> [39,] 495 525
#> [40,] 491 526
#> [41,] 497 527
#> [42,] 495 528
#> [43,] 492 529
#> [44,] 495 530
#> [45,] 494 531
#> [46,] 490 532
#> [47,] 495 533
#> [48,] 495 534
#> [49,] 489 535
#> [50,] 498 536
#> [51,] 499 537
#> [52,] 500 538
#> [53,] 501 539
#> [54,] 502 540
#> [55,] 503 541
#> [56,] 502 542
#> [57,] 504 543
#> [58,] 500 544
#> [59,] 505 545
#> [60,] 502 546
#> [61,] 506 547
#> [62,] 502 548
#> [63,] 506 549
#> [64,] 500 550
#> [65,] 507 551
#> [66,] 508 552
#> [67,] 509 553
#> [68,] 498 554
#> [69,] 499 555
#> [70,] 505 556
#> [71,] 498 557
#> [72,] 506 558
#> [73,] 505 559
#> [74,] 498 560
#> [75,] 498 561
#> [76,] 499 562
#> [77,] 510 563
#> [78,] 502 564
#> [79,] 506 565
#> [80,] 511 566
#> [81,] 512 567
#> [82,] 498 568
#> [83,] 513 569
#> [84,] 514 570
#> [85,] 515 571
#> [86,] 516 572
#> [87,] 500 573
#> [88,] 502 574
#> [89,] 517 575
#> [90,] 518 576
#> [91,] 519 577
#> [92,] 511 578
#> [93,] 499 579
#> [94,] 502 580
#> [95,] 520 581
#> [96,] 521 582
#> [97,] 502 583
#> [98,] 522 584
#> [99,] 523 585
#> [100,] 524 586
#> [101,] 525 587
#> [102,] 526 588
#> [103,] 527 589
#> [104,] 528 590
#> [105,] 529 591
#> [106,] 530 592
#> [107,] 531 593
#> [108,] 532 594
#> [109,] 533 595
#> [110,] 534 596
#> [111,] 535 597
#> [112,] 500 598
#> [113,] 499 599
#> [114,] 536 600
#> [115,] 537 601
#> [116,] 538 602
#> [117,] 539 603
#> [118,] 537 604
#> [119,] 536 605
#> [120,] 536 606
#> [121,] 536 607
#> [122,] 540 608
#> [123,] 537 609
#> [124,] 540 610
#> [125,] 541 611
#> [126,] 536 612
#> [127,] 540 613
#> [128,] 542 614
#> [129,] 537 615
#> [130,] 536 616
#> [131,] 543 617
#> [132,] 544 618
#> [133,] 545 619
#> [134,] 546 620
#> [135,] 536 621
#> [136,] 540 622
#> [137,] 547 623
#> [138,] 548 624
#> [139,] 544 625
#> [140,] 536 626
#> [141,] 549 627
#> [142,] 550 628
#> [143,] 540 629
#> [144,] 551 630
#> [145,] 536 631
#> [146,] 552 632
#> [147,] 553 633
#> [148,] 542 634
#> [149,] 543 635
#> [150,] 548 636
#> [151,] 554 637
#> [152,] 555 638
#> [153,] 546 639
#> [154,] 539 640
#> [155,] 536 641
#> [156,] 556 642
#> [157,] 536 643
#> [158,] 557 644
#> [159,] 549 645
#> [160,] 558 646
#> [161,] 559 647
#> [162,] 537 648
#> [163,] 536 649
#> [164,] 560 650
#> [165,] 559 651
#> [166,] 561 652
#> [167,] 552 653
#> [168,] 561 654
#> [169,] 560 655
#> [170,] 562 656
#> [171,] 549 657
#> [172,] 540 658
#> [173,] 536 659
#> [174,] 561 660
#> [175,] 563 661
#> [176,] 536 662
#> [177,] 564 663
#> [178,] 560 664
#> [179,] 559 665
#> [180,] 540 666
#> [181,] 565 667
#> [182,] 566 668
#> [183,] 567 669
#> [184,] 543 670
#> [185,] 537 671
#> [186,] 568 672
#> [187,] 536 673
#> [188,] 543 674
#> [189,] 569 675
#> [190,] 570 676
#> [191,] 536 677
#> [192,] 571 678
#> [193,] 536 679
#> [194,] 572 680
#> [195,] 573 681
#> [196,] 574 682
#> [197,] 558 683
#> [198,] 565 684
#> [199,] 544 685
#> [200,] 575 686
#> [201,] 576 687
#> [202,] 540 688
#> [203,] 542 689
#> [204,] 540 690
#> [205,] 543 691
#> [206,] 549 692
#> [207,] 543 693
#> [208,] 577 694
#> [209,] 549 695
#> [210,] 578 696
#> [211,] 540 697
#> [212,] 579 698
#> [213,] 543 699
#> [214,] 580 700
#> [215,] 581 701
#> [216,] 536 702
#> [217,] 582 703
#> [218,] 583 704
#> [219,] 551 705
#> [220,] 566 706
#> [221,] 540 707
#> [222,] 549 708
#> [223,] 549 709
#> [224,] 570 710
#> [225,] 584 711
#> [226,] 563 712
#> [227,] 585 713
#> [228,] 586 714
#> [229,] 549 715
#> [230,] 587 716
#> [231,] 552 717
#> [232,] 539 718
#> [233,] 543 719
#> [234,] 588 720
#> [235,] 589 721
#> [236,] 570 722
#> [237,] 590 723
#> [238,] 536 724
#> [239,] 566 725
#> [240,] 591 726
#> [241,] 592 727
#> [242,] 593 728
#> [243,] 536 729
#> [244,] 594 730
#> [245,] 595 731
#> [246,] 561 732
#> [247,] 596 733
#> [248,] 566 734
#> [249,] 566 735
#> [250,] 597 736
#> [251,] 598 737
#> [252,] 599 738
#> [253,] 600 739
#> [254,] 601 740
#> [255,] 602 741
#> [256,] 603 742
#> [257,] 604 743
#> [258,] 605 744
#> [259,] 606 745
#> [260,] 607 746
#> [261,] 608 747
#> [262,] 609 748
#> [263,] 601 749
#> [264,] 610 750
#> [265,] 600 751
#> [266,] 606 752
#> [267,] 606 753
#> [268,] 611 754
#> [269,] 612 755
#> [270,] 613 756
#> [271,] 614 757
#> [272,] 601 758
#> [273,] 615 759
#> [274,] 616 760
#> [275,] 609 761
#> [276,] 617 762
#> [277,] 609 763
#> [278,] 615 764
#> [279,] 618 765
#> [280,] 614 766
#> [281,] 619 767
#> [282,] 620 768
#> [283,] 607 769
#> [284,] 608 770
#> [285,] 621 771
#> [286,] 612 772
#> [287,] 622 773
#> [288,] 610 774
#> [289,] 623 775
#> [290,] 602 776
#> [291,] 606 777
#> [292,] 624 778
#> [293,] 601 779
#> [294,] 625 780
#> [295,] 625 781
#> [296,] 626 782
#> [297,] 609 783
#> [298,] 627 784
#> [299,] 628 785
#> [300,] 625 786
#> [301,] 606 787
#> [302,] 606 788
#> [303,] 629 789
#> [304,] 630 790
#> [305,] 629 791
#> [306,] 615 792
#> [307,] 631 793
#> [308,] 632 794
#> [309,] 612 795
#> [310,] 633 796
#> [311,] 634 797
#> [312,] 610 798
#> [313,] 622 799
#> [314,] 635 800
#> [315,] 607 801
#> [316,] 636 802
#> [317,] 637 803
#> [318,] 638 804
#> [319,] 602 805
#> [320,] 639 806
#> [321,] 601 807
#> [322,] 607 808
#> [323,] 616 809
#> [324,] 630 810
#> [325,] 620 811
#> [326,] 606 812
#> [327,] 602 813
#> [328,] 640 814
#> [329,] 641 815
#> [330,] 642 816
#> [331,] 643 817
#> [332,] 644 818
#> [333,] 607 819
#> [334,] 645 820
#> [335,] 646 821
#> [336,] 647 822
#> [337,] 647 823
#> [338,] 648 824
#> [339,] 649 825
#> [340,] 650 826
#> [341,] 651 827
#> [342,] 652 828
#> [343,] 625 829
#> [344,] 653 830
#> [345,] 654 831
#> [346,] 655 832
#> [347,] 656 833
#> [348,] 622 834
#> [349,] 657 835
#> [350,] 658 836
#> [351,] 620 837
#> [352,] 620 838
#> [353,] 607 839
#> [354,] 659 840
#> [355,] 622 841
#> [356,] 601 842
#> [357,] 615 843
#> [358,] 658 844
#> [359,] 609 845
#> [360,] 660 846
#> [361,] 661 847
#> [362,] 662 848
#> [363,] 657 849
#> [364,] 663 850
#> [365,] 664 851
#> [366,] 608 852
#> [367,] 601 853
#> [368,] 625 854
#> [369,] 665 855
#> [370,] 666 856
#> [371,] 614 857
#> [372,] 614 858
#> [373,] 607 859
#> [374,] 609 860
#> [375,] 606 861
#> [376,] 667 862
#> [377,] 629 863
#> [378,] 668 864
#> [379,] 669 865
#> [380,] 601 866
#> [381,] 670 867
#> [382,] 671 868
#> [383,] 607 869
#> [384,] 607 870
#> [385,] 608 871
#> [386,] 672 872
#> [387,] 673 873
#> [388,] 657 874
#> [389,] 617 875
#> [390,] 674 876
#> [391,] 675 877
#> [392,] 624 878
#> [393,] 676 879
#> [394,] 614 880
#> [395,] 677 881
#> [396,] 635 882
#> [397,] 678 883
#> [398,] 679 884
#> [399,] 639 885
#> [400,] 609 886
#> [401,] 680 887
#> [402,] 681 888
#> [403,] 682 889
#> [404,] 683 890
#> [405,] 648 891
#> [406,] 621 892
#> [407,] 684 893
#> [408,] 685 894
#> [409,] 620 895
#> [410,] 686 896
#> [411,] 687 897
#> [412,] 606 898
#> [413,] 688 899
#> [414,] 689 900
#> [415,] 690 901
#> [416,] 691 902
#> [417,] 692 903
#> [418,] 610 904
#> [419,] 643 905
#> [420,] 638 906
#> [421,] 681 907
#> [422,] 693 908
#> [423,] 694 909
#> [424,] 635 910
#> [425,] 695 911
#> [426,] 625 912
#> [427,] 669 913
#> [428,] 612 914
#> [429,] 696 915
#> [430,] 697 916
#> [431,] 698 917
#> [432,] 699 918
#> [433,] 693 919
#> [434,] 700 920
#> [435,] 603 921
#> [436,] 681 922
#> [437,] 612 923
#> [438,] 701 924
#> [439,] 702 925
#> [440,] 703 926
#> [441,] 617 927
#> [442,] 704 928
#> [443,] 705 929
#> [444,] 706 930
#> [445,] 707 931
#> [446,] 708 932
#> [447,] 709 933
#> [448,] 710 934
#> [449,] 690 935
#> [450,] 711 936
#> [451,] 712 937
#> [452,] 713 938
#> [453,] 714 939
#> [454,] 621 940
#> [455,] 625 941
#> [456,] 673 942
#> [457,] 715 943
#> [458,] 638 944
#> [459,] 614 945
#> [460,] 603 946
#> [461,] 607 947
#> [462,] 669 948
#> [463,] 621 949
#> [464,] 716 950
#> [465,] 635 951
#> [466,] 635 952
#> [467,] 717 953
#> [468,] 631 954
#> [469,] 718 955
#> [470,] 719 956
#> [471,] 600 957
#> [472,] 720 958
#> [473,] 698 959
#> [474,] 709 960
#> [475,] 652 961
#> [476,] 607 962
#> [477,] 652 963
#> [478,] 711 964
#> [479,] 721 965
#> [480,] 648 966
#> [481,] 709 967
#> [482,] 722 968
#> [483,] 698 969
#> [484,] 723 970
#> [485,] 621 971
#> [486,] 724 972
#> [487,] 624 973
#> [488,] 607 974
#> [489,] 657 975
#> [490,] 646 976
#> [491,] 725 977
#> [492,] 671 978
#> [493,] 601 979
#> [494,] 691 980
#> [495,] 646 981
#> [496,] 693 982
#> [497,] 601 983
#> [498,] 677 984
#> [499,] 726 985
#> [500,] 727 986
#> [501,] 618 987
#> [502,] 641 988
#> [503,] 715 989
#> [504,] 616 990
#> [505,] 632 991
#> [506,] 601 992
#> [507,] 728 993
#> [508,] 681 994
#> [509,] 729 995
#> [510,] 730 996
#> [511,] 714 997
#> [512,] 614 998
#> [513,] 632 999
#> [514,] 634 1000
#> [515,] 731 1001
#> [516,] 690 1002
#> [517,] 691 1003
#> [518,] 625 1004
#> [519,] 607 1005
#> [520,] 636 1006
#> [521,] 711 1007
#> [522,] 732 1008
#> [523,] 714 1009
#> [524,] 615 1010
#> [525,] 673 1011
#> [526,] 632 1012
#> [527,] 666 1013
#> [528,] 733 1014
#> [529,] 638 1015
#> [530,] 661 1016
#> [531,] 601 1017
#> [532,] 648 1018
#> [533,] 734 1019
#> [534,] 725 1020
#> [535,] 618 1021
#> [536,] 735 1022
#> [537,] 624 1023
#> [538,] 725 1024
#> [539,] 695 1025
#> [540,] 736 1026
#> [541,] 721 1027
#> [542,] 722 1028
#> [543,] 737 1029
#> [544,] 632 1030
#> [545,] 630 1031
#> [546,] 682 1032
#> [547,] 738 1033
#> [548,] 661 1034
#> [549,] 739 1
#> [550,] 740 2
#> [551,] 741 3
#> [552,] 742 4
#> [553,] 741 5
#> [554,] 743 6
#> [555,] 744 7
#> [556,] 745 8
#> [557,] 746 9
#> [558,] 747 10
#> [559,] 748 11
#> [560,] 749 12
#> [561,] 750 13
#> [562,] 744 14
#> [563,] 751 15
#> [564,] 752 16
#> [565,] 753 17
#> [566,] 754 18
#> [567,] 755 19
#> [568,] 756 20
#> [569,] 757 21
#> [570,] 752 22
#> [571,] 758 23
#> [572,] 759 24
#> [573,] 760 25
#> [574,] 761 26
#> [575,] 762 27
#> [576,] 763 28
#> [577,] 764 29
#> [578,] 745 30
#> [579,] 765 31
#> [580,] 766 32
#> [581,] 767 33
#> [582,] 768 34
#> [583,] 769 35
#> [584,] 770 36
#> [585,] 771 37
#> [586,] 742 38
#> [587,] 772 39
#> [588,] 773 40
#> [589,] 774 41
#> [590,] 748 42
#> [591,] 775 43
#> [592,] 776 44
#> [593,] 777 45
#> [594,] 778 46
#> [595,] 779 47
#> [596,] 776 48
#> [597,] 780 49
#> [598,] 781 50
#> [599,] 782 51
#> [600,] 780 52
#> [601,] 783 53
#> [602,] 784 54
#> [603,] 765 55
#> [604,] 785 56
#> [605,] 786 57
#> [606,] 773 58
#> [607,] 787 59
#> [608,] 783 60
#> [609,] 772 61
#> [610,] 746 62
#> [611,] 788 63
#> [612,] 789 64
#> [613,] 773 65
#> [614,] 790 66
#> [615,] 791 67
#> [616,] 792 68
#> [617,] 793 69
#> [618,] 794 70
#> [619,] 795 71
#> [620,] 779 72
#> [621,] 786 73
#> [622,] 783 74
#> [623,] 747 75
#> [624,] 796 76
#> [625,] 797 77
#> [626,] 798 78
#> [627,] 799 79
#> [628,] 800 80
#> [629,] 765 81
#> [630,] 801 82
#> [631,] 802 83
#> [632,] 803 84
#> [633,] 798 85
#> [634,] 804 86
#> [635,] 772 87
#> [636,] 805 88
#> [637,] 757 89
#> [638,] 745 90
#> [639,] 806 91
#> [640,] 807 92
#> [641,] 808 93
#> [642,] 757 94
#> [643,] 809 95
#> [644,] 810 96
#> [645,] 786 97
#> [646,] 811 98
#> [647,] 812 99
#> [648,] 813 100
#> [649,] 814 101
#> [650,] 815 102
#> [651,] 810 103
#> [652,] 816 104
#> [653,] 817 105
#> [654,] 768 106
#> [655,] 810 107
#> [656,] 818 108
#> [657,] 786 109
#> [658,] 762 110
#> [659,] 744 111
#> [660,] 819 112
#> [661,] 820 113
#> [662,] 821 114
#> [663,] 822 115
#> [664,] 823 116
#> [665,] 824 117
#> [666,] 825 118
#> [667,] 826 119
#> [668,] 773 120
#> [669,] 798 121
#> [670,] 827 122
#> [671,] 745 123
#> [672,] 828 124
#> [673,] 829 125
#> [674,] 830 126
#> [675,] 831 127
#> [676,] 795 128
#> [677,] 832 129
#> [678,] 817 130
#> [679,] 833 131
#> [680,] 795 132
#> [681,] 834 133
#> [682,] 835 134
#> [683,] 836 135
#> [684,] 786 136
#> [685,] 837 137
#> [686,] 838 138
#> [687,] 839 139
#> [688,] 840 140
#> [689,] 792 141
#> [690,] 811 142
#> [691,] 799 143
#> [692,] 791 144
#> [693,] 841 145
#> [694,] 744 146
#> [695,] 747 147
#> [696,] 842 148
#> [697,] 750 149
#> [698,] 843 150
#> [699,] 844 151
#> [700,] 845 152
#> [701,] 846 153
#> [702,] 847 154
#> [703,] 848 155
#> [704,] 789 156
#> [705,] 849 157
#> [706,] 850 158
#> [707,] 851 159
#> [708,] 852 160
#> [709,] 853 161
#> [710,] 799 162
#> [711,] 854 163
#> [712,] 800 164
#> [713,] 773 165
#> [714,] 762 166
#> [715,] 841 167
#> [716,] 747 168
#> [717,] 780 169
#> [718,] 855 170
#> [719,] 856 171
#> [720,] 857 172
#> [721,] 858 173
#> [722,] 859 174
#> [723,] 813 175
#> [724,] 860 176
#> [725,] 861 177
#> [726,] 862 178
#> [727,] 863 179
#> [728,] 864 180
#> [729,] 865 181
#> [730,] 866 182
#> [731,] 772 183
#> [732,] 867 184
#> [733,] 868 185
#> [734,] 786 186
#> [735,] 831 187
#> [736,] 869 188
#> [737,] 870 189
#> [738,] 871 190
#> [739,] 872 191
#> [740,] 823 192
#> [741,] 854 193
#> [742,] 779 194
#> [743,] 873 195
#> [744,] 874 196
#> [745,] 875 197
#> [746,] 876 198
#> [747,] 877 199
#> [748,] 878 200
#> [749,] 879 201
#> [750,] 880 202
#> [751,] 881 203
#> [752,] 882 204
#> [753,] 883 205
#> [754,] 884 206
#> [755,] 788 207
#> [756,] 885 208
#> [757,] 886 209
#> [758,] 887 210
#> [759,] 888 211
#> [760,] 792 212
#> [761,] 889 213
#> [762,] 762 214
#> [763,] 753 215
#> [764,] 776 216
#> [765,] 890 217
#> [766,] 772 218
#> [767,] 891 219
#> [768,] 747 220
#> [769,] 892 221
#> [770,] 893 222
#> [771,] 802 223
#> [772,] 800 224
#> [773,] 894 225
#> [774,] 895 226
#> [775,] 896 227
#> [776,] 897 228
#> [777,] 837 229
#> [778,] 788 230
#> [779,] 826 231
#> [780,] 898 232
#> [781,] 853 233
#> [782,] 800 234
#> [783,] 899 235
#> [784,] 871 236
#> [785,] 900 237
#> [786,] 901 238
#> [787,] 881 239
#> [788,] 902 240
#> [789,] 851 241
#> [790,] 903 242
#> [791,] 812 243
#> [792,] 904 244
#> [793,] 747 245
#> [794,] 905 246
#> [795,] 798 247
#> [796,] 906 248
#> [797,] 907 249
#> [798,] 908 250
#> [799,] 799 251
#> [800,] 909 252
#> [801,] 910 253
#> [802,] 772 254
#> [803,] 911 255
#> [804,] 912 256
#> [805,] 913 257
#> [806,] 742 258
#> [807,] 914 259
#> [808,] 915 260
#> [809,] 916 261
#> [810,] 917 262
#> [811,] 890 263
#> [812,] 789 264
#> [813,] 918 265
#> [814,] 919 266
#> [815,] 771 267
#> [816,] 920 268
#> [817,] 921 269
#> [818,] 800 270
#> [819,] 921 271
#> [820,] 762 272
#> [821,] 916 273
#> [822,] 788 274
#> [823,] 922 275
#> [824,] 923 276
#> [825,] 924 277
#> [826,] 925 278
#> [827,] 926 279
#> [828,] 747 280
#> [829,] 848 281
#> [830,] 927 282
#> [831,] 928 283
#> [832,] 929 284
#> [833,] 930 285
#> [834,] 824 286
#> [835,] 742 287
#> [836,] 931 288
#> [837,] 773 289
#> [838,] 884 290
#> [839,] 932 291
#> [840,] 800 292
#> [841,] 933 293
#> [842,] 788 294
#> [843,] 934 295
#> [844,] 744 296
#> [845,] 848 297
#> [846,] 884 298
#> [847,] 935 299
#> [848,] 813 300
#> [849,] 936 301
#> [850,] 811 302
#> [851,] 762 303
#> [852,] 937 304
#> [853,] 938 305
#> [854,] 921 306
#> [855,] 910 307
#> [856,] 837 308
#> [857,] 939 309
#> [858,] 854 310
#> [859,] 923 311
#> [860,] 940 312
#> [861,] 772 313
#> [862,] 941 314
#> [863,] 942 315
#> [864,] 860 316
#> [865,] 943 317
#> [866,] 913 318
#> [867,] 762 319
#> [868,] 944 320
#> [869,] 903 321
#> [870,] 945 322
#> [871,] 946 323
#> [872,] 797 324
#> [873,] 947 325
#> [874,] 948 326
#> [875,] 800 327
#> [876,] 949 328
#> [877,] 892 329
#> [878,] 919 330
#> [879,] 950 331
#> [880,] 951 332
#> [881,] 952 333
#> [882,] 831 334
#> [883,] 953 335
#> [884,] 954 336
#> [885,] 772 337
#> [886,] 947 338
#> [887,] 955 339
#> [888,] 928 340
#> [889,] 892 341
#> [890,] 744 342
#> [891,] 956 343
#> [892,] 957 344
#> [893,] 954 345
#> [894,] 958 346
#> [895,] 959 347
#> [896,] 960 348
#> [897,] 961 349
#> [898,] 962 350
#> [899,] 963 351
#> [900,] 964 352
#> [901,] 965 353
#> [902,] 966 354
#> [903,] 772 355
#> [904,] 753 356
#> [905,] 762 357
#> [906,] 967 358
#> [907,] 968 359
#> [908,] 867 360
#> [909,] 933 361
#> [910,] 744 362
#> [911,] 969 363
#> [912,] 970 364
#> [913,] 762 365
#> [914,] 861 366
#> [915,] 971 367
#> [916,] 770 368
#> [917,] 972 369
#> [918,] 973 370
#> [919,] 742 371
#> [920,] 974 372
#> [921,] 975 373
#> [922,] 951 374
#> [923,] 976 375
#> [924,] 977 376
#> [925,] 890 377
#> [926,] 978 378
#> [927,] 772 379
#> [928,] 979 380
#> [929,] 788 381
#> [930,] 837 382
#> [931,] 762 383
#> [932,] 980 384
#> [933,] 981 385
#> [934,] 772 386
#> [935,] 956 387
#> [936,] 826 388
#> [937,] 800 389
#> [938,] 982 390
#> [939,] 762 391
#> [940,] 916 392
#> [941,] 983 393
#> [942,] 984 394
#> [943,] 985 395
#> [944,] 750 396
#> [945,] 854 397
#> [946,] 986 398
#> [947,] 987 399
#> [948,] 837 400
#> [949,] 871 401
#> [950,] 866 402
#> [951,] 933 403
#> [952,] 988 404
#> [953,] 989 405
#> [954,] 990 406
#> [955,] 762 407
#> [956,] 742 408
#> [957,] 991 409
#> [958,] 786 410
#> [959,] 992 411
#> [960,] 993 412
#> [961,] 747 413
#> [962,] 994 414
#> [963,] 995 415
#> [964,] 966 416
#> [965,] 771 417
#> [966,] 996 418
#> [967,] 780 419
#> [968,] 997 420
#> [969,] 998 421
#> [970,] 815 422
#> [971,] 999 423
#> [972,] 954 424
#> [973,] 1000 425
#> [974,] 825 426
#> [975,] 902 427
#> [976,] 920 428
#> [977,] 1001 429
#> [978,] 1002 430
#> [979,] 1003 431
#> [980,] 1004 432
#> [981,] 923 433
#> [982,] 1005 434
#> [983,] 1006 435
#> [984,] 1007 436
#> [985,] 916 437
#> [986,] 1008 438
#> [987,] 935 439
#> [988,] 801 440
#> [989,] 1009 441
#> [990,] 1010 442
#> [991,] 991 443
#> [992,] 797 444
#> [993,] 854 445
#> [994,] 954 446
#> [995,] 1011 447
#> [996,] 1012 448
#> [997,] 800 449
#> [998,] 1013 450
#> [999,] 1014 451
#> [1000,] 786 452
#> [1001,] 954 453
#> [1002,] 772 454
#> [1003,] 766 455
#> [1004,] 1015 456
#> [1005,] 881 457
#> [1006,] 1016 458
#> [1007,] 1017 459
#> [1008,] 1018 460
#> [1009,] 839 461
#> [1010,] 1019 462
#> [1011,] 923 463
#> [1012,] 864 464
#> [1013,] 1020 465
#> [1014,] 1021 466
#> [1015,] 1022 467
#> [1016,] 802 468
#> [1017,] 1023 469
#> [1018,] 742 470
#> [1019,] 1024 471
#> [1020,] 1025 472
#> [1021,] 1026 473
#> [1022,] 744 474
#> [1023,] 1027 475
#> [1024,] 742 476
#> [1025,] 1028 477
#> [1026,] 1029 478
#> [1027,] 1030 479
#> [1028,] 1031 480
#> [1029,] 1032 481
#> [1030,] 768 482
#> [1031,] 1033 483
#> [1032,] 1034 484
#> [1033,] 872 485
#>
#> $node.label
#> [1] "r__root"
#> [2] "k__Bacteria"
#> [3] "p__Actinobacteria"
#> [4] "p__Proteobacteria"
#> [5] "p__Bacteroidetes"
#> [6] "p__Firmicutes"
#> [7] "p__Chloroflexi"
#> [8] "p__Spirochaetes"
#> [9] "p__Planctomycetes"
#> [10] "p__Acidobacteria"
#> [11] "p__Chlamydiae"
#> [12] "p__Verrucomicrobia"
#> [13] "c__Actinobacteria"
#> [14] "c__Betaproteobacteria"
#> [15] "c__Gammaproteobacteria"
#> [16] "c__Flavobacteriia"
#> [17] "c__Alphaproteobacteria"
#> [18] "c__un_p__Proteobacteria"
#> [19] "c__Bacilli"
#> [20] "c__Chloroflexia"
#> [21] "c__Deltaproteobacteria"
#> [22] "c__Cytophagia"
#> [23] "c__Sphingobacteriia"
#> [24] "c__un_p__Chloroflexi"
#> [25] "c__Spirochaetia"
#> [26] "c__Clostridia"
#> [27] "c__Planctomycetia"
#> [28] "c__Acidobacteria_Gp10"
#> [29] "c__Chlamydiia"
#> [30] "c__un_p__Verrucomicrobia"
#> [31] "c__Spartobacteria"
#> [32] "c__Acidobacteria_Gp3"
#> [33] "c__Acidobacteria_Gp6"
#> [34] "c__Opitutae"
#> [35] "c__Acidobacteria_Gp17"
#> [36] "c__un_p__Actinobacteria"
#> [37] "c__Verrucomicrobiae"
#> [38] "c__un_p__Bacteroidetes"
#> [39] "c__Acidobacteria_Gp4"
#> [40] "c__un_p__Acidobacteria"
#> [41] "c__Erysipelotrichia"
#> [42] "c__Subdivision3"
#> [43] "c__Acidobacteria_Gp11"
#> [44] "c__Caldilineae"
#> [45] "c__Acidobacteria_Gp25"
#> [46] "c__un_p__Planctomycetes"
#> [47] "c__Bacteroidia"
#> [48] "c__Acidobacteria_Gp5"
#> [49] "c__Acidobacteria_Gp7"
#> [50] "c__Oligoflexia"
#> [51] "o__Actinomycetales"
#> [52] "o__Burkholderiales"
#> [53] "o__Pseudomonadales"
#> [54] "o__Flavobacteriales"
#> [55] "o__Rhizobiales"
#> [56] "o__un_p__Proteobacteria"
#> [57] "o__Sphingomonadales"
#> [58] "o__Bacillales"
#> [59] "o__Xanthomonadales"
#> [60] "o__Herpetosiphonales"
#> [61] "o__Caulobacterales"
#> [62] "o__un_c__Deltaproteobacteria"
#> [63] "o__Rhodospirillales"
#> [64] "o__Myxococcales"
#> [65] "o__un_c__Gammaproteobacteria"
#> [66] "o__Cytophagales"
#> [67] "o__Sphingobacteriales"
#> [68] "o__un_p__Chloroflexi"
#> [69] "o__un_c__Actinobacteria"
#> [70] "o__Methylophilales"
#> [71] "o__un_c__Chloroflexia"
#> [72] "o__Gaiellales"
#> [73] "o__Bdellovibrionales"
#> [74] "o__Chloroflexales"
#> [75] "o__Solirubrobacterales"
#> [76] "o__Acidimicrobiales"
#> [77] "o__un_c__Betaproteobacteria"
#> [78] "o__Spirochaetales"
#> [79] "o__un_c__Alphaproteobacteria"
#> [80] "o__Desulfuromonadales"
#> [81] "o__Clostridiales"
#> [82] "o__Planctomycetales"
#> [83] "o__Rubrobacterales"
#> [84] "o__un_c__Acidobacteria_Gp10"
#> [85] "o__Chlamydiales"
#> [86] "o__un_p__Verrucomicrobia"
#> [87] "o__un_c__Spartobacteria"
#> [88] "o__Enterobacteriales"
#> [89] "o__Sneathiellales"
#> [90] "o__un_c__Acidobacteria_Gp3"
#> [91] "o__un_c__Acidobacteria_Gp6"
#> [92] "o__Opitutales"
#> [93] "o__un_c__Clostridia"
#> [94] "o__Rhodocyclales"
#> [95] "o__Rhodobacterales"
#> [96] "o__un_c__Acidobacteria_Gp17"
#> [97] "o__un_p__Actinobacteria"
#> [98] "o__Alphaproteobacteria_incertae_sedis"
#> [99] "o__Verrucomicrobiales"
#> [100] "o__un_p__Bacteroidetes"
#> [101] "o__un_c__Acidobacteria_Gp4"
#> [102] "o__un_p__Acidobacteria"
#> [103] "o__Erysipelotrichales"
#> [104] "o__un_c__Subdivision3"
#> [105] "o__un_c__Acidobacteria_Gp11"
#> [106] "o__Caldilineales"
#> [107] "o__un_c__Acidobacteria_Gp25"
#> [108] "o__un_p__Planctomycetes"
#> [109] "o__Bacteroidales"
#> [110] "o__un_c__Acidobacteria_Gp5"
#> [111] "o__un_c__Acidobacteria_Gp7"
#> [112] "o__Oligoflexales"
#> [113] "o__Chromatiales"
#> [114] "o__Nitrosomonadales"
#> [115] "f__Thermomonosporaceae"
#> [116] "f__Comamonadaceae"
#> [117] "f__Pseudomonadaceae"
#> [118] "f__Flavobacteriaceae"
#> [119] "f__un_o__Burkholderiales"
#> [120] "f__Streptomycetaceae"
#> [121] "f__Pseudonocardiaceae"
#> [122] "f__Micromonosporaceae"
#> [123] "f__Rhizobiaceae"
#> [124] "f__Oxalobacteraceae"
#> [125] "f__Bradyrhizobiaceae"
#> [126] "f__un_p__Proteobacteria"
#> [127] "f__Nocardioidaceae"
#> [128] "f__un_o__Rhizobiales"
#> [129] "f__Sphingomonadaceae"
#> [130] "f__Burkholderiales_incertae_sedis"
#> [131] "f__Kineosporiaceae"
#> [132] "f__Bacillaceae_1"
#> [133] "f__Sinobacteraceae"
#> [134] "f__Herpetosiphonaceae"
#> [135] "f__Caulobacteraceae"
#> [136] "f__Microbacteriaceae"
#> [137] "f__Hyphomicrobiaceae"
#> [138] "f__un_c__Deltaproteobacteria"
#> [139] "f__Rhodospirillaceae"
#> [140] "f__Xanthomonadaceae"
#> [141] "f__un_o__Actinomycetales"
#> [142] "f__Sandaracinaceae"
#> [143] "f__un_c__Gammaproteobacteria"
#> [144] "f__Phyllobacteriaceae"
#> [145] "f__un_o__Cytophagales"
#> [146] "f__Streptosporangiaceae"
#> [147] "f__Chitinophagaceae"
#> [148] "f__un_p__Chloroflexi"
#> [149] "f__Erythrobacteraceae"
#> [150] "f__Paenibacillaceae_1"
#> [151] "f__un_o__Rhodospirillales"
#> [152] "f__un_c__Actinobacteria"
#> [153] "f__Methylophilaceae"
#> [154] "f__Hyphomonadaceae"
#> [155] "f__Cryomorphaceae"
#> [156] "f__Nocardiaceae"
#> [157] "f__un_c__Chloroflexia"
#> [158] "f__Promicromonosporaceae"
#> [159] "f__Gaiellaceae"
#> [160] "f__un_o__Myxococcales"
#> [161] "f__Bacteriovoracaceae"
#> [162] "f__Chloroflexaceae"
#> [163] "f__Burkholderiaceae"
#> [164] "f__Micrococcaceae"
#> [165] "f__Solirubrobacteraceae"
#> [166] "f__Oscillochloridaceae"
#> [167] "f__Iamiaceae"
#> [168] "f__Sphingobacteriaceae"
#> [169] "f__Acidimicrobiaceae"
#> [170] "f__un_o__Solirubrobacterales"
#> [171] "f__un_c__Betaproteobacteria"
#> [172] "f__Polyangiaceae"
#> [173] "f__Rhodobiaceae"
#> [174] "f__Glycomycetaceae"
#> [175] "f__un_o__Acidimicrobiales"
#> [176] "f__Leptospiraceae"
#> [177] "f__Mycobacteriaceae"
#> [178] "f__un_c__Alphaproteobacteria"
#> [179] "f__Conexibacteraceae"
#> [180] "f__un_o__Chloroflexales"
#> [181] "f__Xanthobacteraceae"
#> [182] "f__Geobacteraceae"
#> [183] "f__Clostridiaceae_1"
#> [184] "f__Planctomycetaceae"
#> [185] "f__Thermoactinomycetaceae_2"
#> [186] "f__Alcaligenaceae"
#> [187] "f__Rubrobacteraceae"
#> [188] "f__Intrasporangiaceae"
#> [189] "f__Paenibacillaceae_2"
#> [190] "f__un_c__Acidobacteria_Gp10"
#> [191] "f__Chlamydiaceae"
#> [192] "f__Geodermatophilaceae"
#> [193] "f__un_p__Verrucomicrobia"
#> [194] "f__Cellulomonadaceae"
#> [195] "f__un_c__Spartobacteria"
#> [196] "f__Enterobacteriaceae"
#> [197] "f__Sneathiellaceae"
#> [198] "f__Bdellovibrionaceae"
#> [199] "f__un_o__Desulfuromonadales"
#> [200] "f__un_o__Xanthomonadales"
#> [201] "f__un_c__Acidobacteria_Gp3"
#> [202] "f__un_c__Acidobacteria_Gp6"
#> [203] "f__Beijerinckiaceae"
#> [204] "f__un_o__Sphingomonadales"
#> [205] "f__Rhizobiales_incertae_sedis"
#> [206] "f__Bacillaceae_2"
#> [207] "f__Haliangiaceae"
#> [208] "f__Planococcaceae"
#> [209] "f__Opitutaceae"
#> [210] "f__Myxococcaceae"
#> [211] "f__un_c__Clostridia"
#> [212] "f__Methylobacteriaceae"
#> [213] "f__Rhodocyclaceae"
#> [214] "f__un_o__Bacillales"
#> [215] "f__Rhodobacteraceae"
#> [216] "f__un_c__Acidobacteria_Gp17"
#> [217] "f__Cryptosporangiaceae"
#> [218] "f__un_p__Actinobacteria"
#> [219] "f__un_o__Alphaproteobacteria_incertae_sedis"
#> [220] "f__Flammeovirgaceae"
#> [221] "f__Lachnospiraceae"
#> [222] "f__Brucellaceae"
#> [223] "f__Labilitrichaceae"
#> [224] "f__Cystobacteraceae"
#> [225] "f__un_o__Chlamydiales"
#> [226] "f__Verrucomicrobiaceae"
#> [227] "f__Spirochaetaceae"
#> [228] "f__un_p__Bacteroidetes"
#> [229] "f__un_c__Acidobacteria_Gp4"
#> [230] "f__Nannocystaceae"
#> [231] "f__un_p__Acidobacteria"
#> [232] "f__un_o__Sphingobacteriales"
#> [233] "f__un_o__Flavobacteriales"
#> [234] "f__Alicyclobacillaceae"
#> [235] "f__Erysipelotrichaceae"
#> [236] "f__un_c__Subdivision3"
#> [237] "f__Parachlamydiaceae"
#> [238] "f__un_c__Acidobacteria_Gp11"
#> [239] "f__Propionibacteriaceae"
#> [240] "f__Peptostreptococcaceae"
#> [241] "f__Caldilineaceae"
#> [242] "f__un_c__Acidobacteria_Gp25"
#> [243] "f__un_p__Planctomycetes"
#> [244] "f__Sporichthyaceae"
#> [245] "f__Prolixibacteraceae"
#> [246] "f__un_c__Acidobacteria_Gp5"
#> [247] "f__Acidimicrobineae_incertae_sedis"
#> [248] "f__un_c__Acidobacteria_Gp7"
#> [249] "f__Ruminococcaceae"
#> [250] "f__Gracilibacteraceae"
#> [251] "f__Oligoflexaceae"
#> [252] "f__Ectothiorhodospiraceae"
#> [253] "f__Nitrosomonadaceae"
#> [254] "g__un_f__Thermomonosporaceae"
#> [255] "g__Pelomonas"
#> [256] "g__Rhizobacter"
#> [257] "g__Flavobacterium"
#> [258] "g__un_o__Burkholderiales"
#> [259] "g__Streptomyces"
#> [260] "g__Lentzea"
#> [261] "g__Actinoplanes"
#> [262] "g__Rhizobium"
#> [263] "g__Noviherbaspirillum"
#> [264] "g__un_f__Comamonadaceae"
#> [265] "g__Bradyrhizobium"
#> [266] "g__Actinocorallia"
#> [267] "g__Amycolatopsis"
#> [268] "g__Actinophytocola"
#> [269] "g__un_p__Proteobacteria"
#> [270] "g__Kribbella"
#> [271] "g__un_o__Rhizobiales"
#> [272] "g__Sphingomonas"
#> [273] "g__Kinneretia"
#> [274] "g__un_f__Burkholderiales_incertae_sedis"
#> [275] "g__Kineosporia"
#> [276] "g__un_f__Oxalobacteraceae"
#> [277] "g__Bacillus"
#> [278] "g__Pseudoduganella"
#> [279] "g__Piscinibacter"
#> [280] "g__Steroidobacter"
#> [281] "g__Sphingopyxis"
#> [282] "g__Herpetosiphon"
#> [283] "g__Phenylobacterium"
#> [284] "g__un_f__Micromonosporaceae"
#> [285] "g__Ensifer"
#> [286] "g__Agromyces"
#> [287] "g__Nocardioides"
#> [288] "g__Devosia"
#> [289] "g__un_f__Bradyrhizobiaceae"
#> [290] "g__un_c__Deltaproteobacteria"
#> [291] "g__Pseudomonas"
#> [292] "g__Kibdelosporangium"
#> [293] "g__Dongia"
#> [294] "g__Variovorax"
#> [295] "g__Pseudoxanthomonas"
#> [296] "g__un_f__Xanthomonadaceae"
#> [297] "g__un_o__Actinomycetales"
#> [298] "g__Massilia"
#> [299] "g__Sandaracinus"
#> [300] "g__un_c__Gammaproteobacteria"
#> [301] "g__Lysobacter"
#> [302] "g__un_f__Pseudonocardiaceae"
#> [303] "g__Pseudonocardia"
#> [304] "g__Mesorhizobium"
#> [305] "g__un_o__Cytophagales"
#> [306] "g__Phyllobacterium"
#> [307] "g__Aquabacterium"
#> [308] "g__un_f__Streptosporangiaceae"
#> [309] "g__Niastella"
#> [310] "g__Aeromicrobium"
#> [311] "g__un_p__Chloroflexi"
#> [312] "g__Altererythrobacter"
#> [313] "g__Bosea"
#> [314] "g__Hyphomicrobium"
#> [315] "g__Paenibacillus"
#> [316] "g__Verrucosispora"
#> [317] "g__Reyranella"
#> [318] "g__un_c__Actinobacteria"
#> [319] "g__un_f__Methylophilaceae"
#> [320] "g__Permianibacter"
#> [321] "g__Hyphomonas"
#> [322] "g__Hydrogenophaga"
#> [323] "g__Dactylosporangium"
#> [324] "g__un_f__Kineosporiaceae"
#> [325] "g__Ohtaekwangia"
#> [326] "g__Caulobacter"
#> [327] "g__Saccharothrix"
#> [328] "g__Cellvibrio"
#> [329] "g__un_f__Cryomorphaceae"
#> [330] "g__Nocardia"
#> [331] "g__un_c__Chloroflexia"
#> [332] "g__Promicromonospora"
#> [333] "g__Gaiella"
#> [334] "g__Polymorphospora"
#> [335] "g__un_o__Myxococcales"
#> [336] "g__Peredibacter"
#> [337] "g__un_f__Chloroflexaceae"
#> [338] "g__Roseiflexus"
#> [339] "g__Burkholderia"
#> [340] "g__Arthrobacter"
#> [341] "g__Solirubrobacter"
#> [342] "g__Oscillochloris"
#> [343] "g__Iamia"
#> [344] "g__Rhodanobacter"
#> [345] "g__un_f__Sphingobacteriaceae"
#> [346] "g__Ilumatobacter"
#> [347] "g__un_o__Solirubrobacterales"
#> [348] "g__un_c__Betaproteobacteria"
#> [349] "g__un_f__Hyphomicrobiaceae"
#> [350] "g__Sorangium"
#> [351] "g__un_f__Rhodobiaceae"
#> [352] "g__Brevundimonas"
#> [353] "g__Asticcacaulis"
#> [354] "g__Micromonospora"
#> [355] "g__Glycomyces"
#> [356] "g__Pedomicrobium"
#> [357] "g__Roseateles"
#> [358] "g__Inhella"
#> [359] "g__Methyloceanibacter"
#> [360] "g__Paraherbaspirillum"
#> [361] "g__un_o__Acidimicrobiales"
#> [362] "g__Turneriella"
#> [363] "g__Mycobacterium"
#> [364] "g__un_f__Polyangiaceae"
#> [365] "g__un_c__Alphaproteobacteria"
#> [366] "g__Conexibacter"
#> [367] "g__un_f__Rhizobiaceae"
#> [368] "g__Acidovorax"
#> [369] "g__Arenimonas"
#> [370] "g__un_o__Chloroflexales"
#> [371] "g__un_f__Xanthobacteraceae"
#> [372] "g__un_f__Sphingomonadaceae"
#> [373] "g__Sphingobium"
#> [374] "g__Rhizocola"
#> [375] "g__Duganella"
#> [376] "g__Lechevalieria"
#> [377] "g__Geobacter"
#> [378] "g__un_f__Phyllobacteriaceae"
#> [379] "g__Clostridium_sensu_stricto"
#> [380] "g__un_f__Planctomycetaceae"
#> [381] "g__Ramlibacter"
#> [382] "g__Planifilum"
#> [383] "g__Achromobacter"
#> [384] "g__Couchioplanes"
#> [385] "g__Catellatospora"
#> [386] "g__Shinella"
#> [387] "g__Rubrobacter"
#> [388] "g__Intrasporangium"
#> [389] "g__Polyangium"
#> [390] "g__un_f__Bacillaceae_1"
#> [391] "g__un_f__Paenibacillaceae_2"
#> [392] "g__Gp10"
#> [393] "g__un_f__Rhodospirillaceae"
#> [394] "g__un_f__Chlamydiaceae"
#> [395] "g__Sphingosinicella"
#> [396] "g__Blastococcus"
#> [397] "g__un_f__Paenibacillaceae_1"
#> [398] "g__un_p__Verrucomicrobia"
#> [399] "g__Cellulomonas"
#> [400] "g__un_f__Hyphomonadaceae"
#> [401] "g__Herbaspirillum"
#> [402] "g__Spartobacteria_genera_incertae_sedis"
#> [403] "g__un_f__Enterobacteriaceae"
#> [404] "g__Ferrovibrio"
#> [405] "g__Bdellovibrio"
#> [406] "g__Ralstonia"
#> [407] "g__Microbacterium"
#> [408] "g__un_o__Desulfuromonadales"
#> [409] "g__un_o__Xanthomonadales"
#> [410] "g__un_f__Caulobacteraceae"
#> [411] "g__Gp3"
#> [412] "g__Gp6"
#> [413] "g__Umezawaea"
#> [414] "g__un_f__Beijerinckiaceae"
#> [415] "g__un_o__Sphingomonadales"
#> [416] "g__Vasilyevaea"
#> [417] "g__Terribacillus"
#> [418] "g__Haliangium"
#> [419] "g__Rhodopseudomonas"
#> [420] "g__Cellulosimicrobium"
#> [421] "g__Methylotenera"
#> [422] "g__Pantoea"
#> [423] "g__un_f__Planococcaceae"
#> [424] "g__Opitutus"
#> [425] "g__Brevibacillus"
#> [426] "g__un_f__Myxococcaceae"
#> [427] "g__Dokdonella"
#> [428] "g__Blastopirellula"
#> [429] "g__un_f__Nocardioidaceae"
#> [430] "g__un_c__Clostridia"
#> [431] "g__Microvirga"
#> [432] "g__un_f__Rhodocyclaceae"
#> [433] "g__un_o__Bacillales"
#> [434] "g__Paenisporosarcina"
#> [435] "g__Amaricoccus"
#> [436] "g__Chryseobacterium"
#> [437] "g__Cedecea"
#> [438] "g__Marmoricola"
#> [439] "g__Gp17"
#> [440] "g__Cryptosporangium"
#> [441] "g__un_p__Actinobacteria"
#> [442] "g__Fictibacillus"
#> [443] "g__Rhizomicrobium"
#> [444] "g__un_f__Flammeovirgaceae"
#> [445] "g__un_f__Lachnospiraceae"
#> [446] "g__Ochrobactrum"
#> [447] "g__Labilithrix"
#> [448] "g__Cystobacter"
#> [449] "g__un_o__Chlamydiales"
#> [450] "g__Bauldia"
#> [451] "g__Luteolibacter"
#> [452] "g__un_f__Spirochaetaceae"
#> [453] "g__un_p__Bacteroidetes"
#> [454] "g__un_c__Acidobacteria_Gp4"
#> [455] "g__Cryobacterium"
#> [456] "g__Rudaea"
#> [457] "g__un_f__Intrasporangiaceae"
#> [458] "g__Nannocystis"
#> [459] "g__Methylovorus"
#> [460] "g__Novosphingobium"
#> [461] "g__un_f__Flavobacteriaceae"
#> [462] "g__Phytohabitans"
#> [463] "g__Pirellula"
#> [464] "g__Yonghaparkia"
#> [465] "g__un_p__Acidobacteria"
#> [466] "g__Cohnella"
#> [467] "g__Ammoniibacillus"
#> [468] "g__un_o__Sphingobacteriales"
#> [469] "g__Nonomuraea"
#> [470] "g__un_o__Flavobacteriales"
#> [471] "g__Tumebacillus"
#> [472] "g__Actinomadura"
#> [473] "g__Turicibacter"
#> [474] "g__Uliginosibacterium"
#> [475] "g__un_f__Cystobacteraceae"
#> [476] "g__un_f__Iamiaceae"
#> [477] "g__Plantactinospora"
#> [478] "g__Aquihabitans"
#> [479] "g__Roseimicrobium"
#> [480] "g__Subdivision3_genera_incertae_sedis"
#> [481] "g__Cupriavidus"
#> [482] "g__Archangium"
#> [483] "g__un_f__Parachlamydiaceae"
#> [484] "g__Methyloversatilis"
#> [485] "g__Gp11"
#> [486] "g__un_f__Microbacteriaceae"
#> [487] "g__un_f__Propionibacteriaceae"
#> [488] "g__Inquilinus"
#> [489] "g__Catelliglobosispora"
#> [490] "g__Byssovorax"
#> [491] "g__un_f__Bacteriovoracaceae"
#> [492] "g__Sporacetigenium"
#> [493] "g__Azohydromonas"
#> [494] "g__Xenophilus"
#> [495] "g__un_f__Bacillaceae_2"
#> [496] "g__Bacteriovorax"
#> [497] "g__Lysinibacillus"
#> [498] "g__Caenimonas"
#> [499] "g__Geodermatophilus"
#> [500] "g__un_f__Caldilineaceae"
#> [501] "g__Gp25"
#> [502] "g__un_f__Sinobacteraceae"
#> [503] "g__Gordonia"
#> [504] "g__un_f__Nannocystaceae"
#> [505] "g__Angustibacter"
#> [506] "g__Terrimonas"
#> [507] "g__Pseudorhodoferax"
#> [508] "g__un_p__Planctomycetes"
#> [509] "g__Enterobacter"
#> [510] "g__Sporichthya"
#> [511] "g__Mangrovibacterium"
#> [512] "g__Blastocatella"
#> [513] "g__Sphingorhabdus"
#> [514] "g__Chitinophaga"
#> [515] "g__un_f__Erythrobacteraceae"
#> [516] "g__Gp5"
#> [517] "g__Phreatobacter"
#> [518] "g__Gracilibacillus"
#> [519] "g__Stenotrophomonas"
#> [520] "g__Planosporangium"
#> [521] "g__un_o__Rhodospirillales"
#> [522] "g__un_f__Verrucomicrobiaceae"
#> [523] "g__Aciditerrimonas"
#> [524] "g__Aridibacter"
#> [525] "g__Rubrivivax"
#> [526] "g__Phycicoccus"
#> [527] "g__un_f__Chitinophagaceae"
#> [528] "g__Starkeya"
#> [529] "g__Gp7"
#> [530] "g__Methylophilus"
#> [531] "g__un_f__Leptospiraceae"
#> [532] "g__Schlegelella"
#> [533] "g__un_f__Burkholderiaceae"
#> [534] "g__Clostridium_III"
#> [535] "g__Romboutsia"
#> [536] "g__Povalibacter"
#> [537] "g__un_f__Gracilibacteraceae"
#> [538] "g__Pelagibius"
#> [539] "g__Clostridium_XI"
#> [540] "g__Aggregicoccus"
#> [541] "g__Oligoflexus"
#> [542] "g__un_c__Subdivision3"
#> [543] "g__Parachlamydia"
#> [544] "g__Thioalkalivibrio"
#> [545] "g__Lacibacter"
#> [546] "g__Chryseolinea"
#> [547] "g__un_f__Sneathiellaceae"
#> [548] "g__Nitrosospira"
#> [549] "g__Leptospira"
#>
#> $edge.length
#> [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [38] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [75] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [112] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [149] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [186] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [223] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [260] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [297] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [334] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [371] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [408] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [445] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [482] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [519] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [556] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [593] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [630] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [667] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [704] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [741] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [778] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [815] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [852] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [889] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [926] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [963] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#> [1000] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#>
#> $tip.label
#> [1] "s__un_f__Thermomonosporaceae"
#> [2] "s__Pelomonas_puraquae"
#> [3] "s__Rhizobacter_bergeniae"
#> [4] "s__Flavobacterium_terrae"
#> [5] "s__un_g__Rhizobacter"
#> [6] "s__un_o__Burkholderiales"
#> [7] "s__un_g__Streptomyces"
#> [8] "s__Lentzea_flaviverrucosa"
#> [9] "s__un_g__Actinoplanes"
#> [10] "s__un_g__Rhizobium"
#> [11] "s__un_g__Noviherbaspirillum"
#> [12] "s__un_f__Comamonadaceae"
#> [13] "s__Bradyrhizobium_neotropicale"
#> [14] "s__Streptomyces_ederensis"
#> [15] "s__Actinocorallia_herbida"
#> [16] "s__un_g__Amycolatopsis"
#> [17] "s__Actinophytocola_burenkhanensis"
#> [18] "s__un_p__Proteobacteria"
#> [19] "s__Kribbella_catacumbae"
#> [20] "s__un_o__Rhizobiales"
#> [21] "s__un_g__Sphingomonas"
#> [22] "s__Amycolatopsis_keratiniphila_subsp._keratiniphila"
#> [23] "s__Kinneretia_asaccharophila"
#> [24] "s__un_f__Burkholderiales_incertae_sedis"
#> [25] "s__Kineosporia_rhamnosa"
#> [26] "s__un_f__Oxalobacteraceae"
#> [27] "s__un_g__Bacillus"
#> [28] "s__Pseudoduganella_violaceinigra"
#> [29] "s__Piscinibacter_aquaticus"
#> [30] "s__un_g__Lentzea"
#> [31] "s__Steroidobacter_denitrificans"
#> [32] "s__Sphingopyxis_soli"
#> [33] "s__un_g__Herpetosiphon"
#> [34] "s__Phenylobacterium_composti"
#> [35] "s__un_f__Micromonosporaceae"
#> [36] "s__un_g__Ensifer"
#> [37] "s__un_g__Agromyces"
#> [38] "s__un_g__Flavobacterium"
#> [39] "s__un_g__Nocardioides"
#> [40] "s__un_g__Devosia"
#> [41] "s__un_f__Bradyrhizobiaceae"
#> [42] "s__Noviherbaspirillum_suwonense"
#> [43] "s__un_c__Deltaproteobacteria"
#> [44] "s__Pseudomonas_chlororaphis_subsp._piscium"
#> [45] "s__Kibdelosporangium_phytohabitans"
#> [46] "s__Dongia_mobilis"
#> [47] "s__un_g__Variovorax"
#> [48] "s__un_g__Pseudomonas"
#> [49] "s__Pseudoxanthomonas_gei"
#> [50] "s__un_f__Xanthomonadaceae"
#> [51] "s__un_o__Actinomycetales"
#> [52] "s__Pseudoxanthomonas_wuyuanensis"
#> [53] "s__un_g__Massilia"
#> [54] "s__Sandaracinus_amylolyticus"
#> [55] "s__Steroidobacter_agariperforans"
#> [56] "s__un_c__Gammaproteobacteria"
#> [57] "s__Lysobacter_brunescens"
#> [58] "s__Devosia_insulae"
#> [59] "s__un_f__Pseudonocardiaceae"
#> [60] "s__Massilia_aerilata"
#> [61] "s__Nocardioides_albus"
#> [62] "s__Actinoplanes_xinjiangensis"
#> [63] "s__un_g__Pseudonocardia"
#> [64] "s__un_g__Mesorhizobium"
#> [65] "s__Devosia_chinhatensis"
#> [66] "s__un_o__Cytophagales"
#> [67] "s__Phyllobacterium_bourgognense"
#> [68] "s__un_g__Aquabacterium"
#> [69] "s__un_f__Streptosporangiaceae"
#> [70] "s__un_g__Niastella"
#> [71] "s__Aeromicrobium_ginsengisoli"
#> [72] "s__Variovorax_boronicumulans"
#> [73] "s__Lysobacter_panaciterrae"
#> [74] "s__Massilia_namucuonensis"
#> [75] "s__Rhizobium_alvei"
#> [76] "s__un_p__Chloroflexi"
#> [77] "s__un_g__Altererythrobacter"
#> [78] "s__un_g__Bosea"
#> [79] "s__Hyphomicrobium_vulgare"
#> [80] "s__Paenibacillus_panacisoli"
#> [81] "s__un_g__Steroidobacter"
#> [82] "s__Verrucosispora_andamanensis"
#> [83] "s__Reyranella_soli"
#> [84] "s__un_c__Actinobacteria"
#> [85] "s__Bosea_eneae"
#> [86] "s__un_f__Methylophilaceae"
#> [87] "s__Nocardioides_agariphilus"
#> [88] "s__Permianibacter_aggregans"
#> [89] "s__Sphingomonas_soli"
#> [90] "s__Lentzea_jiangxiensis"
#> [91] "s__un_g__Hyphomonas"
#> [92] "s__un_g__Hydrogenophaga"
#> [93] "s__un_g__Dactylosporangium"
#> [94] "s__Sphingomonas_daechungensis"
#> [95] "s__un_f__Kineosporiaceae"
#> [96] "s__Ohtaekwangia_koreensis"
#> [97] "s__Lysobacter_terrae"
#> [98] "s__Caulobacter_henricii"
#> [99] "s__Saccharothrix_longispora"
#> [100] "s__Cellvibrio_mixtus_subsp._mixtus"
#> [101] "s__un_f__Cryomorphaceae"
#> [102] "s__un_g__Nocardia"
#> [103] "s__un_g__Ohtaekwangia"
#> [104] "s__un_c__Chloroflexia"
#> [105] "s__Promicromonospora_xylanilytica"
#> [106] "s__un_g__Phenylobacterium"
#> [107] "s__Ohtaekwangia_kribbensis"
#> [108] "s__Gaiella_occulta"
#> [109] "s__un_g__Lysobacter"
#> [110] "s__Bacillus_thuringiensis"
#> [111] "s__Streptomyces_acidiscabies"
#> [112] "s__Polymorphospora_rubra"
#> [113] "s__un_o__Myxococcales"
#> [114] "s__Peredibacter_starrii"
#> [115] "s__un_f__Chloroflexaceae"
#> [116] "s__un_g__Roseiflexus"
#> [117] "s__un_g__Burkholderia"
#> [118] "s__un_g__Arthrobacter"
#> [119] "s__un_g__Solirubrobacter"
#> [120] "s__Devosia_yakushimensis"
#> [121] "s__Bosea_lathyri"
#> [122] "s__un_g__Oscillochloris"
#> [123] "s__Lentzea_kentuckyensis"
#> [124] "s__Iamia_majanohamensis"
#> [125] "s__Rhodanobacter_denitrificans"
#> [126] "s__un_f__Sphingobacteriaceae"
#> [127] "s__Ilumatobacter_fluminis"
#> [128] "s__Aeromicrobium_panaciterrae"
#> [129] "s__un_o__Solirubrobacterales"
#> [130] "s__un_g__Promicromonospora"
#> [131] "s__un_c__Betaproteobacteria"
#> [132] "s__un_g__Aeromicrobium"
#> [133] "s__un_f__Hyphomicrobiaceae"
#> [134] "s__Sorangium_cellulosum"
#> [135] "s__un_f__Rhodobiaceae"
#> [136] "s__Lysobacter_enzymogenes"
#> [137] "s__Brevundimonas_basaltis"
#> [138] "s__Asticcacaulis_solisilvae"
#> [139] "s__un_g__Micromonospora"
#> [140] "s__un_g__Glycomyces"
#> [141] "s__Aquabacterium_commune"
#> [142] "s__Caulobacter_fusiformis"
#> [143] "s__un_g__Hyphomicrobium"
#> [144] "s__Phyllobacterium_myrsinacearum"
#> [145] "s__Pedomicrobium_manganicum"
#> [146] "s__Streptomyces_bangladeshensis"
#> [147] "s__Rhizobium_subbaraonis"
#> [148] "s__un_g__Roseateles"
#> [149] "s__un_g__Bradyrhizobium"
#> [150] "s__Inhella_inkyongensis"
#> [151] "s__Methyloceanibacter_caenitepidi"
#> [152] "s__Paraherbaspirillum_soli"
#> [153] "s__un_o__Acidimicrobiales"
#> [154] "s__Turneriella_parva"
#> [155] "s__un_g__Mycobacterium"
#> [156] "s__Mesorhizobium_gobiense"
#> [157] "s__un_f__Polyangiaceae"
#> [158] "s__un_c__Alphaproteobacteria"
#> [159] "s__Conexibacter_arvalis"
#> [160] "s__un_f__Rhizobiaceae"
#> [161] "s__Acidovorax_soli"
#> [162] "s__Hyphomicrobium_sulfonivorans"
#> [163] "s__un_g__Arenimonas"
#> [164] "s__un_g__Paenibacillus"
#> [165] "s__Devosia_pacifica"
#> [166] "s__Bacillus_abyssalis"
#> [167] "s__un_g__Pedomicrobium"
#> [168] "s__Rhizobium_laguerreae"
#> [169] "s__un_g__Pseudoxanthomonas"
#> [170] "s__un_o__Chloroflexales"
#> [171] "s__un_f__Xanthobacteraceae"
#> [172] "s__un_f__Sphingomonadaceae"
#> [173] "s__un_g__Sphingobium"
#> [174] "s__Rhizocola_hellebori"
#> [175] "s__Cellvibrio_ostraviensis"
#> [176] "s__Duganella_radicis"
#> [177] "s__un_g__Lechevalieria"
#> [178] "s__un_g__Geobacter"
#> [179] "s__un_f__Phyllobacteriaceae"
#> [180] "s__un_g__Clostridium_sensu_stricto"
#> [181] "s__un_f__Planctomycetaceae"
#> [182] "s__un_g__Ramlibacter"
#> [183] "s__Nocardioides_jensenii"
#> [184] "s__Planifilum_composti"
#> [185] "s__un_g__Achromobacter"
#> [186] "s__Lysobacter_panacisoli"
#> [187] "s__un_g__Ilumatobacter"
#> [188] "s__Couchioplanes_caeruleus_subsp._azureus"
#> [189] "s__un_g__Catellatospora"
#> [190] "s__Shinella_kummerowiae"
#> [191] "s__Rubrobacter_bracarensis"
#> [192] "s__Roseiflexus_castenholzii"
#> [193] "s__Arenimonas_daejeonensis"
#> [194] "s__Variovorax_soli"
#> [195] "s__un_g__Intrasporangium"
#> [196] "s__Polyangium_fumosum"
#> [197] "s__un_f__Bacillaceae_1"
#> [198] "s__un_f__Paenibacillaceae_2"
#> [199] "s__un_g__Gp10"
#> [200] "s__un_f__Rhodospirillaceae"
#> [201] "s__un_f__Chlamydiaceae"
#> [202] "s__Sphingosinicella_vermicomposti"
#> [203] "s__Blastococcus_saxobsidens"
#> [204] "s__un_f__Paenibacillaceae_1"
#> [205] "s__un_p__Verrucomicrobia"
#> [206] "s__Cellulomonas_humilata"
#> [207] "s__Pseudonocardia_adelaidensis"
#> [208] "s__un_f__Hyphomonadaceae"
#> [209] "s__Herbaspirillum_aquaticum"
#> [210] "s__un_g__Spartobacteria_genera_incertae_sedis"
#> [211] "s__un_f__Enterobacteriaceae"
#> [212] "s__Aquabacterium_parvum"
#> [213] "s__Ferrovibrio_denitrificans"
#> [214] "s__Bacillus_infantis"
#> [215] "s__un_g__Actinophytocola"
#> [216] "s__Pseudomonas_soli"
#> [217] "s__Bdellovibrio_bacteriovorus"
#> [218] "s__Nocardioides_dilutus"
#> [219] "s__un_g__Ralstonia"
#> [220] "s__Rhizobium_rosettiformans"
#> [221] "s__Microbacterium_aerolatum"
#> [222] "s__un_o__Desulfuromonadales"
#> [223] "s__Reyranella_massiliensis"
#> [224] "s__Paenibacillus_terrae"
#> [225] "s__un_o__Xanthomonadales"
#> [226] "s__un_f__Caulobacteraceae"
#> [227] "s__un_g__Gp3"
#> [228] "s__un_g__Gp6"
#> [229] "s__Brevundimonas_kwangchunensis"
#> [230] "s__Pseudonocardia_xinjiangensis"
#> [231] "s__Solirubrobacter_taibaiensis"
#> [232] "s__Umezawaea_tangerina"
#> [233] "s__un_g__Acidovorax"
#> [234] "s__Paenibacillus_glycanilyticus"
#> [235] "s__un_f__Beijerinckiaceae"
#> [236] "s__Shinella_zoogloeoides"
#> [237] "s__un_o__Sphingomonadales"
#> [238] "s__un_g__Vasilyevaea"
#> [239] "s__un_g__Blastococcus"
#> [240] "s__Terribacillus_goriensis"
#> [241] "s__un_g__Conexibacter"
#> [242] "s__un_g__Haliangium"
#> [243] "s__un_g__Saccharothrix"
#> [244] "s__Rhodopseudomonas_rhenobacensis"
#> [245] "s__Rhizobium_vignae"
#> [246] "s__Cellulosimicrobium_funkei"
#> [247] "s__Bosea_massiliensis"
#> [248] "s__un_g__Methylotenera"
#> [249] "s__un_g__Pantoea"
#> [250] "s__un_f__Planococcaceae"
#> [251] "s__Hyphomicrobium_zavarzinii"
#> [252] "s__Opitutus_terrae"
#> [253] "s__Brevibacillus_ginsengisoli"
#> [254] "s__Nocardioides_panacisoli"
#> [255] "s__un_f__Myxococcaceae"
#> [256] "s__un_g__Dokdonella"
#> [257] "s__Blastopirellula_cremea"
#> [258] "s__Flavobacterium_saliperosum"
#> [259] "s__un_f__Nocardioidaceae"
#> [260] "s__un_c__Clostridia"
#> [261] "s__Microvirga_guangxiensis"
#> [262] "s__un_f__Rhodocyclaceae"
#> [263] "s__un_g__Bdellovibrio"
#> [264] "s__Mesorhizobium_silamurunense"
#> [265] "s__un_o__Bacillales"
#> [266] "s__Paenisporosarcina_macmurdoensis"
#> [267] "s__Agromyces_indicus"
#> [268] "s__Amaricoccus_tamworthensis"
#> [269] "s__Chryseobacterium_defluvii"
#> [270] "s__Paenibacillus_urinalis"
#> [271] "s__Chryseobacterium_wanjuense"
#> [272] "s__Bacillus_infernus"
#> [273] "s__un_g__Microvirga"
#> [274] "s__Pseudonocardia_seranimata"
#> [275] "s__un_g__Cedecea"
#> [276] "s__un_g__Marmoricola"
#> [277] "s__un_g__Gp17"
#> [278] "s__Cryptosporangium_minutisporangium"
#> [279] "s__un_p__Actinobacteria"
#> [280] "s__Rhizobium_nepotum"
#> [281] "s__Mycobacterium_canariasense"
#> [282] "s__un_g__Fictibacillus"
#> [283] "s__un_g__Rhizomicrobium"
#> [284] "s__un_f__Flammeovirgaceae"
#> [285] "s__un_f__Lachnospiraceae"
#> [286] "s__Burkholderia_heleia"
#> [287] "s__Flavobacterium_anhuiense"
#> [288] "s__un_g__Ochrobactrum"
#> [289] "s__Devosia_riboflavina"
#> [290] "s__Cellulomonas_hominis"
#> [291] "s__Labilithrix_luteola"
#> [292] "s__Paenibacillus_pectinilyticus"
#> [293] "s__un_g__Cystobacter"
#> [294] "s__Pseudonocardia_kunmingensis"
#> [295] "s__un_o__Chlamydiales"
#> [296] "s__Streptomyces_bullii"
#> [297] "s__Mycobacterium_vaccae"
#> [298] "s__un_g__Cellulomonas"
#> [299] "s__Bauldia_consociata"
#> [300] "s__un_g__Cellvibrio"
#> [301] "s__un_g__Luteolibacter"
#> [302] "s__un_g__Caulobacter"
#> [303] "s__Bacillus_nealsonii"
#> [304] "s__un_f__Spirochaetaceae"
#> [305] "s__un_p__Bacteroidetes"
#> [306] "s__un_g__Chryseobacterium"
#> [307] "s__un_g__Brevibacillus"
#> [308] "s__Brevundimonas_aveniformis"
#> [309] "s__un_c__Acidobacteria_Gp4"
#> [310] "s__Arenimonas_oryziterrae"
#> [311] "s__Marmoricola_scoriae"
#> [312] "s__Cryobacterium_arcticum"
#> [313] "s__Nocardioides_daeguensis"
#> [314] "s__Rudaea_cellulosilytica"
#> [315] "s__un_f__Intrasporangiaceae"
#> [316] "s__Duganella_phyllosphaerae"
#> [317] "s__Nannocystis_exedens"
#> [318] "s__un_g__Blastopirellula"
#> [319] "s__Bacillus_plakortidis"
#> [320] "s__un_g__Methylovorus"
#> [321] "s__Haliangium_tepidum"
#> [322] "s__un_g__Novosphingobium"
#> [323] "s__un_f__Flavobacteriaceae"
#> [324] "s__Altererythrobacter_troitsensis"
#> [325] "s__Phytohabitans_houttuyneae"
#> [326] "s__Pirellula_staleyi"
#> [327] "s__Paenibacillus_prosopidis"
#> [328] "s__Yonghaparkia_alkaliphila"
#> [329] "s__Microbacterium_fluvii"
#> [330] "s__un_g__Paenisporosarcina"
#> [331] "s__un_p__Acidobacteria"
#> [332] "s__Cohnella_panacarvi"
#> [333] "s__Ammoniibacillus_agariperforans"
#> [334] "s__Ilumatobacter_nonamiense"
#> [335] "s__un_o__Sphingobacteriales"
#> [336] "s__Nonomuraea_salmonea"
#> [337] "s__Nocardioides_mesophilus"
#> [338] "s__Phytohabitans_flavus"
#> [339] "s__un_o__Flavobacteriales"
#> [340] "s__Rhizomicrobium_electricum"
#> [341] "s__Microbacterium_arthrosphaerae"
#> [342] "s__Streptomyces_chrysomallus_subsp._chrysomallus"
#> [343] "s__Tumebacillus_ginsengisoli"
#> [344] "s__un_g__Actinomadura"
#> [345] "s__Nonomuraea_maritima"
#> [346] "s__Turicibacter_sanguinis"
#> [347] "s__Uliginosibacterium_gangwonense"
#> [348] "s__un_f__Cystobacteraceae"
#> [349] "s__un_f__Iamiaceae"
#> [350] "s__un_g__Plantactinospora"
#> [351] "s__Aquihabitans_daechungensis"
#> [352] "s__Roseimicrobium_gellanilyticum"
#> [353] "s__un_g__Subdivision3_genera_incertae_sedis"
#> [354] "s__Cupriavidus_necator"
#> [355] "s__Nocardioides_caricicola"
#> [356] "s__Actinophytocola_timorensis"
#> [357] "s__Bacillus_horti"
#> [358] "s__Archangium_gephyra"
#> [359] "s__un_f__Parachlamydiaceae"
#> [360] "s__un_g__Planifilum"
#> [361] "s__Cystobacter_violaceus"
#> [362] "s__Streptomyces_seranimatus"
#> [363] "s__Methyloversatilis_universalis"
#> [364] "s__un_g__Gp11"
#> [365] "s__Bacillus_litoralis"
#> [366] "s__Lechevalieria_xinjiangensis"
#> [367] "s__un_f__Microbacteriaceae"
#> [368] "s__Ensifer_saheli"
#> [369] "s__un_f__Propionibacteriaceae"
#> [370] "s__Inquilinus_ginsengisoli"
#> [371] "s__Flavobacterium_gyeonganense"
#> [372] "s__Catelliglobosispora_koreensis"
#> [373] "s__Byssovorax_cruenta"
#> [374] "s__un_g__Cohnella"
#> [375] "s__un_f__Bacteriovoracaceae"
#> [376] "s__Sporacetigenium_mesophilum"
#> [377] "s__Bdellovibrio_exovorus"
#> [378] "s__Azohydromonas_australica"
#> [379] "s__Nocardioides_iriomotensis"
#> [380] "s__Xenophilus_aerolatus"
#> [381] "s__Pseudonocardia_parietis"
#> [382] "s__Brevundimonas_faecalis"
#> [383] "s__Bacillus_idriensis"
#> [384] "s__un_f__Bacillaceae_2"
#> [385] "s__Bacteriovorax_stolpii"
#> [386] "s__Nocardioides_terrigena"
#> [387] "s__un_g__Tumebacillus"
#> [388] "s__Solirubrobacter_pauli"
#> [389] "s__Paenibacillus_brasilensis"
#> [390] "s__un_g__Lysinibacillus"
#> [391] "s__Bacillus_invictae"
#> [392] "s__Microvirga_lupini"
#> [393] "s__Caenimonas_terrae"
#> [394] "s__un_g__Geodermatophilus"
#> [395] "s__un_f__Caldilineaceae"
#> [396] "s__Bradyrhizobium_daqingense"
#> [397] "s__Arenimonas_metalli"
#> [398] "s__un_g__Gp25"
#> [399] "s__un_f__Sinobacteraceae"
#> [400] "s__un_g__Brevundimonas"
#> [401] "s__un_g__Shinella"
#> [402] "s__Ramlibacter_henchirensis"
#> [403] "s__Cystobacter_gracilis"
#> [404] "s__un_g__Gordonia"
#> [405] "s__un_f__Nannocystaceae"
#> [406] "s__un_g__Angustibacter"
#> [407] "s__Bacillus_kokeshiiformis"
#> [408] "s__Flavobacterium_subsaxonicum"
#> [409] "s__un_g__Terrimonas"
#> [410] "s__Lysobacter_dokdonensis"
#> [411] "s__un_g__Pseudorhodoferax"
#> [412] "s__un_p__Planctomycetes"
#> [413] "s__Rhizobium_rhizoryzae"
#> [414] "s__un_g__Enterobacter"
#> [415] "s__un_g__Sporichthya"
#> [416] "s__un_g__Cupriavidus"
#> [417] "s__Agromyces_subbeticus"
#> [418] "s__Mangrovibacterium_diazotrophicum"
#> [419] "s__Pseudoxanthomonas_indica"
#> [420] "s__Blastocatella_fastidiosa"
#> [421] "s__Sphingorhabdus_planktonica"
#> [422] "s__Nocardia_salmonicida"
#> [423] "s__un_g__Chitinophaga"
#> [424] "s__Nonomuraea_muscovyensis"
#> [425] "s__un_f__Erythrobacteraceae"
#> [426] "s__Arthrobacter_globiformis"
#> [427] "s__un_g__Terribacillus"
#> [428] "s__un_g__Amaricoccus"
#> [429] "s__un_g__Gp5"
#> [430] "s__Phreatobacter_oligotrophus"
#> [431] "s__un_g__Gracilibacillus"
#> [432] "s__un_g__Stenotrophomonas"
#> [433] "s__Marmoricola_aequoreus"
#> [434] "s__un_g__Planosporangium"
#> [435] "s__un_o__Rhodospirillales"
#> [436] "s__un_f__Verrucomicrobiaceae"
#> [437] "s__Microvirga_aerilata"
#> [438] "s__Aciditerrimonas_ferrireducens"
#> [439] "s__un_g__Bauldia"
#> [440] "s__un_g__Verrucosispora"
#> [441] "s__Aridibacter_famidurans"
#> [442] "s__Rubrivivax_gelatinosus"
#> [443] "s__Terrimonas_aquatica"
#> [444] "s__Altererythrobacter_xinjiangensis"
#> [445] "s__Arenimonas_donghaensis"
#> [446] "s__Nonomuraea_jabiensis"
#> [447] "s__un_g__Phycicoccus"
#> [448] "s__un_f__Chitinophagaceae"
#> [449] "s__Paenibacillus_barcinonensis"
#> [450] "s__Starkeya_koreensis"
#> [451] "s__un_g__Gp7"
#> [452] "s__Lysobacter_oryzae"
#> [453] "s__Nonomuraea_kuesteri"
#> [454] "s__Nocardioides_marinquilinus"
#> [455] "s__un_g__Sphingopyxis"
#> [456] "s__un_g__Methylophilus"
#> [457] "s__Blastococcus_jejuensis"
#> [458] "s__un_f__Leptospiraceae"
#> [459] "s__Schlegelella_aquatica"
#> [460] "s__un_f__Burkholderiaceae"
#> [461] "s__Micromonospora_siamensis"
#> [462] "s__Clostridium_straminisolvens"
#> [463] "s__Marmoricola_bigeumensis"
#> [464] "s__Clostridium_roseum"
#> [465] "s__un_g__Romboutsia"
#> [466] "s__Povalibacter_uvarum"
#> [467] "s__un_f__Gracilibacteraceae"
#> [468] "s__Reyranella_graminifolii"
#> [469] "s__Pelagibius_litoralis"
#> [470] "s__Flavobacterium_hauense"
#> [471] "s__un_g__Clostridium_XI"
#> [472] "s__Aggregicoccus_edonensis"
#> [473] "s__Oligoflexus_tunisiensis"
#> [474] "s__Streptomyces_fimbriatus"
#> [475] "s__un_c__Subdivision3"
#> [476] "s__Flavobacterium_urocaniciphilum"
#> [477] "s__Parachlamydia_acanthamoebae"
#> [478] "s__Thioalkalivibrio_sulfidiphilus"
#> [479] "s__Lacibacter_daechungensis"
#> [480] "s__Chryseolinea_serpens"
#> [481] "s__un_f__Sneathiellaceae"
#> [482] "s__Phenylobacterium_koreense"
#> [483] "s__Nitrosospira_multiformis"
#> [484] "s__un_g__Leptospira"
#> [485] "s__un_g__Rubrobacter"
#>
#> $Nnode
#> [1] 549
#>
#> attr(,"class")
#> [1] "phylo"
# check all nodes matched!
if (requireNamespace("picante")) {
picante::match.phylo.comm(tax_tree, t(otutab)) -> nn
nrow(nn$comm) == nrow(t(otutab))
}
#> Loading required namespace: picante