Extract each sample network from the whole network — extract_sample_net • MetaNet

Extract each sample network from the whole network

extract_sample_net(
  whole_net,
  otutab,
  threads = 1,
  save_net = FALSE,
  fast = TRUE,
  remove_negative = FALSE,
  verbose = TRUE
)

Arguments

whole_net: the whole network
otutab: otutab, columns are samples, these columns will be extract
threads: threads, default: 1
save_net: should save these sub_nets? FALSE or a filename
fast: less indexes for faster calculate ?
remove_negative: remove negative edge or not? default: FALSE
verbose: verbose

Value

a dataframe contains all sub_net parameters

See also

Other topological: fit_power(), get_group_skeleton(), links_stat(), nc(), net_par(), rand_net(), rand_net_par(), smallworldness()

Examples

data(otutab, package = "pcutils")
extract_sample_net(co_net, otutab) -> sub_net_pars
#> extracting
#> calculating topological indexes